Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   GTW26_RS01980 Genome accession   NZ_CP047643
Coordinates   431787..433142 (+) Length   451 a.a.
NCBI ID   WP_004365026.1    Uniprot ID   A0A0H2ZKT5
Organism   Pseudomonas aeruginosa CI27     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 426787..438142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTW26_RS01960 (GTW26_01950) - 427624..428190 (-) 567 WP_003110405.1 hypothetical protein -
  GTW26_RS01965 (GTW26_01955) rsmD 428193..428789 (-) 597 WP_003102864.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  GTW26_RS01970 (GTW26_01960) - 428789..430276 (-) 1488 WP_004365024.1 pitrilysin family protein -
  GTW26_RS01975 (GTW26_01965) - 430269..431666 (-) 1398 WP_003084498.1 pitrilysin family protein -
  GTW26_RS01980 (GTW26_01970) pilA 431787..433142 (+) 1356 WP_004365026.1 signal recognition particle-docking protein FtsY Machinery gene
  GTW26_RS01985 (GTW26_01975) ftsE 433139..433810 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  GTW26_RS01990 (GTW26_01980) ftsX 433810..434817 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  GTW26_RS01995 (GTW26_01985) rpoH 434931..435785 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  GTW26_RS02000 (GTW26_01990) - 435850..436455 (+) 606 WP_003084511.1 hypothetical protein -
  GTW26_RS02005 (GTW26_01995) mtgA 436460..437191 (-) 732 WP_003100972.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  GTW26_RS02010 (GTW26_02000) - 437228..437605 (+) 378 WP_003084513.1 DUF423 domain-containing protein -
  GTW26_RS02015 (GTW26_02005) thiS 437708..437908 (+) 201 WP_003084514.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 47939.36 Da        Isoelectric Point: 4.5795

>NTDB_id=360390 GTW26_RS01980 WP_004365026.1 431787..433142(+) (pilA) [Pseudomonas aeruginosa CI27]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAEPPAP
VAEAPLAGDEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQGLSKTSASI
GEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVEQPLQVD
VAREPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAV
QAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTGLALTKL
DGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=360390 GTW26_RS01980 WP_004365026.1 431787..433142(+) (pilA) [Pseudomonas aeruginosa CI27]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCTGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCCGAGCCGCCGGCGCCG
GTTGCCGAAGCGCCGCTCGCCGGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGCCCCGAGGCGCCCGTCGCACA
ACCCGAGCCTATCCTCGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGTTGCGCCGCTGGCCGCCGCTC
CGGCAGTCAGCGAGCCGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGACTGTCCAAGACCAGCGCCAGCATC
GGCGAAGGCATGGCCAGCCTGTTCCTCGGCCGCAAGGAAATCGACGACGACCTGCTCGACGACATCGAGACGCGCCTGCT
GACCGCCGACGTCGGCGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGCGCGTGGCGCGCAAGGAGCTGGCCG
ACAGCGGCGCGCTGTACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAGCAGCCGTTGCAGGTCGAC
GTCGCGCGCGAGCCCTATGTGATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGACCACCACCATCGGCAAGCTGGCGAA
GAAGCTGCAACTCGAGGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCCGTGGAGCAGTTGCAGG
TCTGGGGCGAGCGCAACCGCATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCCGCCTCGGTGATCTTCGACGCGGTG
CAGGCCGCCAAGGCCCGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACGCCTGCATACCAAGGACAACCTGATGGA
GGAGCTGAAGAAGGTGCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCCATGAGGTCCTGCTGGTGCTCGACGCCG
GCACCGGGCAGAACGCCATCAACCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGCCTGGCCCTGACCAAACTG
GACGGCACCGCCAAGGGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCGCTATATCGGTGTCGGCGA
GGGGATCGACGATCTCCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGCGGGAGAACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(246-445)

SRP54-type protein, helical bundle domain (SRP54_N)

(161-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKT5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.344

96.009

0.455

Multiple sequence alignment