Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GUK18_RS20570 Genome accession   NZ_CP047600
Coordinates   4304767..4305372 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli O84:H7 strain Trh52     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4299767..4310372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GUK18_RS24145 - 4300321..4300419 (+) 99 Protein_4052 hypothetical protein -
  GUK18_RS20540 (GUK18_20545) rsmS 4300472..4300633 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  GUK18_RS20545 (GUK18_20550) priC 4300647..4301174 (-) 528 WP_024223151.1 primosomal replication protein N'' -
  GUK18_RS20550 (GUK18_20555) ybaN 4301244..4301621 (+) 378 WP_001188900.1 DUF454 family protein -
  GUK18_RS20555 (GUK18_20560) apt 4301774..4302325 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  GUK18_RS20560 (GUK18_20565) dnaX 4302454..4304385 (+) 1932 WP_000122025.1 DNA polymerase III subunit gamma/tau -
  GUK18_RS20565 (GUK18_20570) ybaB 4304438..4304767 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  GUK18_RS20570 (GUK18_20575) recR 4304767..4305372 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  GUK18_RS20575 (GUK18_20580) htpG 4305482..4307356 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  GUK18_RS20580 (GUK18_20585) adk 4307537..4308181 (+) 645 WP_001313630.1 adenylate kinase -
  GUK18_RS20585 (GUK18_20590) hemH 4308313..4309275 (+) 963 WP_001250114.1 ferrochelatase -
  GUK18_RS20590 (GUK18_20595) aes 4309250..4310218 (-) 969 WP_024223149.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=360381 GUK18_RS20570 WP_001195025.1 4304767..4305372(+) (recR) [Escherichia coli O84:H7 strain Trh52]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=360381 GUK18_RS20570 WP_001195025.1 4304767..4305372(+) (recR) [Escherichia coli O84:H7 strain Trh52]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443