Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   I33_RS16690 Genome accession   NC_017195
Coordinates   3361703..3362416 (-) Length   237 a.a.
NCBI ID   WP_014478072.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis str. RO-NN-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3356703..3367416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I33_RS16670 (I33_3587) ghrB 3356847..3357824 (+) 978 WP_080009902.1 D-glycerate dehydrogenase -
  I33_RS16675 (I33_3588) psdB 3357862..3359802 (-) 1941 WP_014478069.1 lantibiotic ABC transporter permease PsdB -
  I33_RS16680 (I33_3589) psdA 3359777..3360556 (-) 780 WP_014478070.1 lantibiotic ABC transporter ATP-binding protein PsdA -
  I33_RS16685 (I33_3590) psdS 3360639..3361709 (-) 1071 WP_014478071.1 two-component sensor histidine kinase PsdS -
  I33_RS16690 (I33_3591) braR 3361703..3362416 (-) 714 WP_014478072.1 two-component system response regulator PsdR Regulator
  I33_RS16695 (I33_3592) - 3362563..3362772 (+) 210 WP_014478073.1 hypothetical protein -
  I33_RS16700 (I33_3593) yvcN 3362808..3363572 (-) 765 WP_080009845.1 arylamine N-acetyltransferase -
  I33_RS16705 (I33_3594) crh 3363573..3363830 (-) 258 WP_003219835.1 HPr family phosphocarrier protein -
  I33_RS16710 (I33_3595) whiA 3363854..3364804 (-) 951 WP_003243775.1 DNA-binding protein WhiA -
  I33_RS16715 (I33_3596) mgfK 3364827..3365780 (-) 954 WP_014478075.1 gluconeogenesis morphogenetic factor -
  I33_RS16720 (I33_3597) rapZ 3365781..3366668 (-) 888 WP_003243903.1 RNase adapter RapZ -
  I33_RS16725 (I33_3598) rppI 3366693..3367169 (-) 477 WP_010886622.1 8-oxo-dGTP diphosphatase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27511.47 Da        Isoelectric Point: 4.7412

>NTDB_id=36037 I33_RS16690 WP_014478072.1 3361703..3362416(-) (braR) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
MYRILLVEDDERIASLLGGHLQKYGYEVKIAEQLNDIKLEFAEMKPDLVLLDINLPFFDGFYWCRQIRTISNAPIIFISA
RTDELNQVMAIENGGDDYITKPFHLEVVMAKIKSVLRRTYGEYSPSLPQESRIVELGGLTIYPDQNEAEWNSVRILFSQK
EFQLLSIFVREHKKIVSRDVLLEALWDDVDFVDDNTLTVNVNRLRRKLENAGLKDCISTIRGQGYQFQVNRKDEAEC

Nucleotide


Download         Length: 714 bp        

>NTDB_id=36037 I33_RS16690 WP_014478072.1 3361703..3362416(-) (braR) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
GTGTATCGGATTTTGCTTGTGGAAGATGATGAGCGGATTGCTTCTTTGCTGGGCGGTCATCTTCAAAAATACGGATATGA
AGTGAAAATTGCTGAACAGCTGAATGATATAAAATTGGAATTTGCAGAAATGAAGCCTGATCTTGTGCTGCTTGATATCA
ACCTGCCTTTTTTTGACGGGTTTTATTGGTGCAGGCAAATCCGTACCATTTCCAATGCGCCGATTATCTTTATATCGGCA
CGGACCGATGAGCTGAATCAGGTAATGGCGATTGAAAATGGCGGCGATGATTATATCACAAAGCCGTTCCATCTAGAGGT
AGTGATGGCCAAAATCAAAAGCGTCCTGCGCCGCACATATGGTGAATACTCGCCCTCTTTGCCGCAGGAATCAAGAATAG
TGGAGCTTGGCGGGCTGACGATTTATCCTGATCAAAATGAAGCGGAGTGGAACAGCGTCCGGATTTTGTTTTCCCAAAAA
GAATTTCAGCTTCTCTCTATTTTTGTGAGGGAGCATAAAAAAATTGTCTCTCGTGATGTGCTATTGGAGGCGTTATGGGA
TGACGTTGATTTTGTCGATGACAATACGTTAACGGTCAATGTCAACCGGCTGCGGAGAAAATTGGAGAATGCCGGACTGA
AAGATTGCATTTCCACAATCAGAGGACAAGGCTATCAATTTCAAGTCAATCGGAAGGATGAAGCGGAATGTTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-227)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

45.536

94.515

0.43

Multiple sequence alignment