Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GUK18_RS09120 Genome accession   NZ_CP047600
Coordinates   1880542..1881057 (-) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli O84:H7 strain Trh52     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1875542..1886057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GUK18_RS09100 (GUK18_09130) emrB 1876167..1877705 (+) 1539 WP_001296316.1 multidrug efflux MFS transporter permease subunit EmrB -
  GUK18_RS09105 (GUK18_09135) - 1877963..1878670 (+) 708 WP_024223849.1 RNA ligase family protein -
  GUK18_RS09110 (GUK18_09140) - 1878667..1879779 (+) 1113 WP_000638133.1 ATP-binding protein -
  GUK18_RS09115 (GUK18_09145) tnpA 1879888..1880346 (-) 459 WP_000526115.1 IS200/IS605-like element IS200C family transposase -
  GUK18_RS09120 (GUK18_09150) luxS 1880542..1881057 (-) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  GUK18_RS09125 (GUK18_09155) gshA 1881207..1882763 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  GUK18_RS09130 (GUK18_09160) yqaA 1882836..1883264 (-) 429 WP_001287462.1 YqaA family protein -
  GUK18_RS09135 (GUK18_09165) yqaB 1883261..1883827 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  GUK18_RS09165 (GUK18_09195) csrA 1885016..1885201 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=360325 GUK18_RS09120 WP_001130208.1 1880542..1881057(-) (luxS) [Escherichia coli O84:H7 strain Trh52]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=360325 GUK18_RS09120 WP_001130208.1 1880542..1881057(-) (luxS) [Escherichia coli O84:H7 strain Trh52]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTAGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737