Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   GUK18_RS05845 Genome accession   NZ_CP047600
Coordinates   1173102..1174529 (+) Length   475 a.a.
NCBI ID   WP_029392099.1    Uniprot ID   -
Organism   Escherichia coli O84:H7 strain Trh52     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1168102..1179529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GUK18_RS05805 (GUK18_05845) yeeW 1168286..1168480 (+) 195 WP_000988600.1 DUF5983 family protein -
  GUK18_RS05810 - 1168526..1168606 (+) 81 Protein_1161 hypothetical protein -
  GUK18_RS05815 (GUK18_05850) - 1168895..1169023 (-) 129 Protein_1162 transposase domain-containing protein -
  GUK18_RS05820 (GUK18_05855) - 1169095..1169277 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  GUK18_RS05825 (GUK18_05860) tmaR 1169378..1169707 (-) 330 WP_000450409.1 DUF496 family protein -
  GUK18_RS05830 (GUK18_05865) yeeA 1169879..1170937 (-) 1059 WP_001200891.1 FUSC family protein -
  GUK18_RS05835 (GUK18_05870) sbmC 1171135..1171608 (-) 474 WP_001105414.1 DNA gyrase inhibitor SbmC -
  GUK18_RS05840 (GUK18_05875) dacD 1171727..1172893 (-) 1167 WP_001442313.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  GUK18_RS05845 (GUK18_05880) sbcB 1173102..1174529 (+) 1428 WP_029392099.1 exodeoxyribonuclease I Machinery gene
  GUK18_RS05850 (GUK18_05885) tsuB 1174572..1174799 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  GUK18_RS05855 (GUK18_05890) tsuA 1174813..1175871 (-) 1059 WP_000492315.1 thiosulfate utilization transporter TsuA/YeeE -
  GUK18_RS05860 (GUK18_05895) plaP 1176050..1177408 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  GUK18_RS05865 (GUK18_05900) yoeI 1177398..1177460 (-) 63 WP_010723108.1 membrane protein YoeI -
  GUK18_RS05870 (GUK18_05905) yeeY 1177675..1178604 (-) 930 WP_174592226.1 LysR substrate-binding domain-containing protein -
  GUK18_RS05875 (GUK18_05910) yeeZ 1178650..1179474 (-) 825 WP_000754763.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54515.83 Da        Isoelectric Point: 5.6070

>NTDB_id=360315 GUK18_RS05845 WP_029392099.1 1173102..1174529(+) (sbcB) [Escherichia coli O84:H7 strain Trh52]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNLIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAIIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRTAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=360315 GUK18_RS05845 WP_029392099.1 1173102..1174529(+) (sbcB) [Escherichia coli O84:H7 strain Trh52]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATCTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCCGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCTATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCATAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCACAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.298

98.947

0.577