Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FA707_RS10110 Genome accession   NZ_CP039712
Coordinates   2134286..2135656 (-) Length   456 a.a.
NCBI ID   WP_136954082.1    Uniprot ID   A0A4D7CZW8
Organism   Vagococcus zengguangii strain MN-17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2129286..2140656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FA707_RS10090 (FA707_10090) cysS 2129412..2130821 (-) 1410 WP_136954078.1 cysteine--tRNA ligase -
  FA707_RS10095 (FA707_10095) epsC 2130826..2131362 (-) 537 WP_136954079.1 serine O-acetyltransferase EpsC -
  FA707_RS10100 (FA707_10100) gltX 2131649..2133112 (-) 1464 WP_136954080.1 glutamate--tRNA ligase -
  FA707_RS10105 (FA707_10105) - 2133161..2134264 (-) 1104 WP_136954081.1 PIN/TRAM domain-containing protein -
  FA707_RS10110 (FA707_10110) radA 2134286..2135656 (-) 1371 WP_136954082.1 DNA repair protein RadA Machinery gene
  FA707_RS10115 (FA707_10115) - 2135778..2136311 (-) 534 WP_136954083.1 dUTP diphosphatase -
  FA707_RS10120 (FA707_10120) - 2136380..2137264 (-) 885 WP_136954084.1 PhzF family phenazine biosynthesis isomerase -
  FA707_RS10125 (FA707_10125) - 2137264..2138043 (-) 780 WP_136954085.1 YibE/F family protein -
  FA707_RS10130 (FA707_10130) - 2138040..2139083 (-) 1044 WP_136954086.1 YibE/F family protein -
  FA707_RS10135 (FA707_10135) - 2139217..2139474 (-) 258 WP_136954087.1 metal-sensitive transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50030.43 Da        Isoelectric Point: 6.6996

>NTDB_id=360311 FA707_RS10110 WP_136954082.1 2134286..2135656(-) (radA) [Vagococcus zengguangii strain MN-17]
MAKKAKTHFECQACGYISPQYLGRCPNCGTWNEMMEVKEQVESARNSRVDLTGKQAKPQTLGEVTTSKTPRVKTRMDELN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSQQLHLSGGKVLYVSGEESAEQIKMRAERLTVEGNDFYVYPETDMSLIRQ
TIETLKPDYVIIDSIQTMMQPEITSASGSVSQVRETTAELMKIAKSNQIAIFIVGHVTKEGALAGPRMLEHMVDTVLYFE
GDRHHTFRILRAVKNRFGSTNEIGIFEMQERGLVEVTNPSEVFLEERLDGATGSAIVVSMEGSRPILAEVQALVSPTLFG
NARRTATGLDYNRVTLIMAVLEKRAGLLLQNQDAYLKAAGGVKLDEPAIDLAIAMSIASSYKDRGTDASECFIGEIGLTG
EIRRVNRIDHRVKEAQKLGFKKVYVPVNNLHGWEPPTDIEVVGVSTLSEALKRVFG

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=360311 FA707_RS10110 WP_136954082.1 2134286..2135656(-) (radA) [Vagococcus zengguangii strain MN-17]
GTGGCTAAAAAAGCAAAAACTCATTTTGAATGTCAGGCGTGTGGTTATATTTCGCCTCAATATTTAGGTCGTTGCCCGAA
TTGTGGTACGTGGAATGAAATGATGGAAGTCAAAGAACAAGTCGAATCGGCACGTAATAGTCGTGTTGATTTGACCGGTA
AACAAGCAAAACCGCAAACGTTAGGGGAAGTCACAACGAGTAAAACGCCACGTGTTAAAACCAGAATGGACGAATTAAAC
CGTGTATTAGGTGGTGGAGTGGTCCCTGGTTCTCTCGTGTTAATTGGGGGAGATCCTGGTATTGGAAAATCAACGTTACT
GCTACAAGTATCACAACAGCTACATTTATCTGGTGGTAAAGTCTTGTATGTTTCTGGTGAAGAAAGTGCGGAACAAATTA
AGATGCGCGCGGAACGTCTAACAGTGGAAGGTAATGATTTTTATGTTTATCCAGAAACTGATATGTCGCTTATCCGTCAA
ACAATTGAAACCTTAAAGCCCGATTATGTGATTATTGACTCGATTCAGACGATGATGCAACCGGAAATTACCAGCGCCTC
AGGTAGTGTTAGTCAAGTACGTGAAACAACAGCAGAATTGATGAAAATTGCGAAGAGTAATCAAATTGCGATTTTTATTG
TTGGACATGTCACTAAAGAAGGTGCATTAGCCGGTCCGCGTATGTTGGAACATATGGTGGATACCGTCTTGTATTTTGAA
GGGGATCGTCACCATACGTTTAGAATTTTACGAGCGGTCAAAAATCGTTTTGGTTCCACAAATGAAATCGGTATTTTTGA
GATGCAAGAACGTGGGTTAGTCGAAGTGACCAATCCTTCTGAAGTGTTCTTAGAAGAACGTTTGGACGGTGCGACCGGTT
CAGCGATTGTTGTTTCGATGGAAGGTAGTCGTCCAATTTTGGCGGAAGTTCAGGCGTTAGTCAGTCCGACCTTGTTTGGT
AATGCCAGAAGAACAGCGACTGGTTTAGATTACAACCGAGTAACCTTGATTATGGCGGTATTAGAAAAACGTGCCGGCTT
GCTATTACAAAACCAAGATGCTTATTTAAAAGCTGCCGGTGGTGTTAAATTAGACGAGCCCGCGATTGATTTGGCGATTG
CGATGAGCATTGCCTCAAGTTATAAAGATCGTGGTACGGATGCGAGTGAATGTTTTATTGGTGAAATTGGCTTAACGGGT
GAAATTCGTCGGGTGAATCGTATTGATCATCGGGTGAAAGAAGCACAAAAATTAGGGTTTAAAAAAGTTTACGTTCCAGT
GAATAACTTACATGGTTGGGAGCCACCTACGGATATTGAGGTCGTCGGTGTTTCAACGCTGAGTGAAGCATTGAAGCGTG
TCTTTGGATAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-34)

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)

AAA domain (AAA_25)

(65-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4D7CZW8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

72.588

100

0.726
  radA Streptococcus mitis NCTC 12261

72.747

99.781

0.726
  radA Streptococcus pneumoniae Rx1

72.368

100

0.724
  radA Streptococcus pneumoniae D39

72.368

100

0.724
  radA Streptococcus pneumoniae R6

72.368

100

0.724
  radA Streptococcus pneumoniae TIGR4

72.368

100

0.724
  radA Bacillus subtilis subsp. subtilis str. 168

64.835

99.781

0.647

Multiple sequence alignment