Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FA707_RS09505 Genome accession   NZ_CP039712
Coordinates   2001181..2002992 (-) Length   603 a.a.
NCBI ID   WP_136953972.1    Uniprot ID   A0A4D7CZF9
Organism   Vagococcus zengguangii strain MN-17     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1996181..2007992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FA707_RS09500 (FA707_09500) - 1996506..2001017 (-) 4512 WP_136953971.1 5'-nucleotidase C-terminal domain-containing protein -
  FA707_RS09505 (FA707_09505) pepF 2001181..2002992 (-) 1812 WP_136953972.1 oligoendopeptidase F Regulator
  FA707_RS09510 (FA707_09510) - 2003028..2004164 (-) 1137 WP_136953973.1 competence protein CoiA family protein -
  FA707_RS09515 (FA707_09515) - 2004302..2005573 (-) 1272 WP_136953974.1 NCS2 family permease -
  FA707_RS09520 (FA707_09520) - 2005739..2006749 (-) 1011 WP_136953975.1 putative sulfate exporter family transporter -
  FA707_RS09525 (FA707_09525) - 2006799..2007497 (-) 699 WP_136953976.1 hypothetical protein -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 68493.11 Da        Isoelectric Point: 4.5599

>NTDB_id=360305 FA707_RS09505 WP_136953972.1 2001181..2002992(-) (pepF) [Vagococcus zengguangii strain MN-17]
MSEPKQLPKREELAEALTWDLTKIFATDEAFEESYAAFEQKIPEVKKFQGTLKEGASQFLAAIEATLELTRELETMYVYT
SMKNDQDTANTKYQGMSSKMSGLVAKASEAISWFEPEMLQLTDEEVWAYFEEEPKLEVYRQMIKSTLAERAHVLSEKEEA
LLAGAGEIFGTAGDTFAILNNADLKFPIIEGEEGEPIQLSHGVYGQLMESVKPEVREAAFKGLYSVYEQFQHTFATTLAS
NVKVHNYKAKVRNYPSARAAALAGNHIPESVYDTLVEVVHKHLPLLHRYVALRKKMMGVDELHMYDMYTPILGDAPIRYS
YEESVEKTKVALQPLGEEYAKVVEEAFSNRWVDVVENQGKRSGAYSSGAYDTAPYILMNWHDSLDQLYTLVHEMGHSVHS
YFTRSNQPYVYGDYSIFLAEIASTTNENILTEHLLATETDPKVRAFILNRYLDGFKGTVFRQTQFAEFEHFIHVEDAKGT
PLTSEFLSDYYANLNADYYGPAVEKDPEIALEWSRIPHFYYNYYVYQYSTGFAAASALAAKIVAGEEGALENYLAYLKAG
RSDYPIEIMKKAGVDMTQATYIEDAMKVFETRLDEFEALIDQL

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=360305 FA707_RS09505 WP_136953972.1 2001181..2002992(-) (pepF) [Vagococcus zengguangii strain MN-17]
ATGAGTGAACCAAAACAATTACCAAAACGCGAAGAACTAGCTGAAGCGTTGACTTGGGACTTAACGAAAATTTTTGCAAC
AGATGAGGCGTTTGAAGAAAGTTACGCTGCTTTTGAGCAAAAAATCCCTGAGGTCAAAAAATTCCAAGGAACATTAAAAG
AAGGGGCATCACAATTCTTAGCCGCAATCGAAGCAACGTTAGAATTAACTCGTGAATTAGAAACGATGTATGTCTACACA
AGCATGAAGAACGACCAAGATACAGCGAATACGAAGTATCAAGGGATGTCTAGCAAAATGAGCGGTTTAGTGGCGAAAGC
GTCTGAAGCTATTTCTTGGTTTGAACCAGAGATGTTACAATTAACGGATGAAGAAGTTTGGGCTTATTTTGAAGAAGAAC
CAAAACTTGAAGTGTACCGTCAAATGATTAAATCAACTTTAGCAGAGCGTGCGCATGTTTTATCTGAAAAAGAAGAAGCA
TTATTAGCTGGAGCCGGCGAAATTTTCGGTACAGCGGGTGATACGTTTGCAATTTTAAACAATGCCGATTTAAAATTCCC
AATTATCGAAGGGGAAGAGGGCGAACCAATTCAATTATCACACGGTGTTTATGGTCAATTAATGGAGAGTGTGAAACCGG
AAGTGCGTGAAGCAGCGTTCAAAGGCTTGTACAGCGTTTATGAGCAATTCCAACACACGTTTGCAACAACCTTAGCAAGT
AACGTGAAAGTTCATAACTACAAAGCTAAAGTGCGCAACTATCCATCAGCTCGTGCTGCTGCTTTAGCAGGTAACCATAT
TCCTGAAAGTGTTTATGATACTTTGGTAGAAGTTGTTCATAAGCATTTGCCATTATTACATCGTTACGTGGCGTTACGCA
AAAAAATGATGGGTGTCGATGAGTTACATATGTATGATATGTACACACCCATTTTAGGCGATGCACCAATTCGCTATTCT
TATGAAGAATCAGTTGAAAAAACTAAAGTAGCGTTACAACCTTTAGGCGAAGAATATGCCAAAGTGGTTGAAGAAGCTTT
CTCAAATCGTTGGGTGGACGTGGTCGAAAATCAAGGGAAACGTAGTGGTGCTTATTCTTCAGGTGCTTATGATACAGCCC
CTTATATTTTAATGAACTGGCATGATAGTTTGGATCAATTGTACACATTAGTGCATGAAATGGGACACAGTGTTCATAGC
TACTTCACACGTAGCAATCAGCCATATGTTTATGGTGACTACTCAATTTTCTTAGCAGAAATTGCTTCAACAACAAATGA
AAATATCTTAACTGAGCACTTGTTAGCGACTGAAACAGATCCTAAAGTGCGTGCGTTTATCTTGAATCGCTACTTAGATG
GTTTCAAAGGAACAGTTTTCCGTCAAACCCAATTTGCGGAATTTGAGCACTTTATCCATGTTGAAGATGCGAAAGGAACA
CCGTTAACAAGTGAATTCTTAAGTGATTACTACGCTAACTTAAATGCGGACTATTATGGACCAGCTGTTGAAAAAGATCC
AGAGATTGCATTAGAGTGGTCGCGTATTCCTCACTTCTACTATAATTATTATGTGTATCAATATTCAACAGGTTTTGCGG
CTGCCTCAGCGTTAGCAGCTAAAATTGTAGCCGGTGAAGAGGGCGCTTTAGAAAACTACTTAGCTTACTTGAAAGCTGGA
CGTAGTGACTATCCAATCGAAATCATGAAAAAAGCAGGTGTTGATATGACACAGGCTACGTACATTGAAGATGCCATGAA
AGTCTTTGAAACACGATTAGATGAATTCGAAGCCTTGATTGATCAATTATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4D7CZF9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

56.734

98.507

0.559

Multiple sequence alignment