Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   FA707_RS02710 Genome accession   NZ_CP039712
Coordinates   572993..574669 (+) Length   558 a.a.
NCBI ID   WP_136952778.1    Uniprot ID   A0A4D7CU80
Organism   Vagococcus zengguangii strain MN-17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 567993..579669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FA707_RS02680 (FA707_02680) - 568462..568893 (+) 432 WP_136952772.1 Asp23/Gls24 family envelope stress response protein -
  FA707_RS02685 (FA707_02685) nusB 568895..569335 (+) 441 WP_136952773.1 transcription antitermination factor NusB -
  FA707_RS02690 (FA707_02690) xseA 569673..571013 (+) 1341 WP_136952774.1 exodeoxyribonuclease VII large subunit -
  FA707_RS02695 (FA707_02695) - 571017..571259 (+) 243 WP_136952775.1 exodeoxyribonuclease VII small subunit -
  FA707_RS02700 (FA707_02700) - 571252..572139 (+) 888 WP_136952776.1 polyprenyl synthetase family protein -
  FA707_RS02705 (FA707_02705) - 572145..572963 (+) 819 WP_136952777.1 TlyA family RNA methyltransferase -
  FA707_RS02710 (FA707_02710) recN 572993..574669 (+) 1677 WP_136952778.1 DNA repair protein RecN Machinery gene
  FA707_RS02715 (FA707_02715) - 574814..576502 (+) 1689 WP_136952779.1 IS1182 family transposase -
  FA707_RS02720 (FA707_02720) - 576487..577317 (-) 831 WP_136952780.1 pyruvate, water dikinase regulatory protein -
  FA707_RS02725 (FA707_02725) - 577393..577845 (+) 453 WP_136952781.1 Fur family transcriptional regulator -
  FA707_RS02730 (FA707_02730) rpsU 577949..578125 (+) 177 WP_126831326.1 30S ribosomal protein S21 -
  FA707_RS02735 (FA707_02735) - 578150..578593 (+) 444 WP_136952782.1 GatB/YqeY domain-containing protein -
  FA707_RS02740 (FA707_02740) - 578765..579208 (+) 444 WP_136952783.1 GyrI-like domain-containing protein -
  FA707_RS10440 - 579231..579404 (+) 174 WP_154299931.1 hypothetical protein -

Sequence

Protein


Download         Length: 558 a.a.        Molecular weight: 63305.48 Da        Isoelectric Point: 4.4151

>NTDB_id=360291 FA707_RS02710 WP_136952778.1 572993..574669(+) (recN) [Vagococcus zengguangii strain MN-17]
MLEELVIKNFAIISDLRLSFEKGMTVLTGETGAGKSIIIDAVGLLVGGRGSADFIRHGEDKSILEGQFFVNQRVLPELQE
VMENLGIEMDDPTVIISRTLFRSGKNICRVNNQLVNTTALKQIGQYLVDIHGQHEHQELMNSERHIGYLDQFASQEIQPV
LTEYQTAFQQQQTLARQLRQLETNEKEFVQRMDMLNFQREEIETAEIVIGEEQKLLEERQMLVNHQKITDALNMSYQFIQ
NDEMNSLSNIGQAMSELETISDLTEDFKTLYEEVSSSYYQLEEAARTIQSELSGMEMDEERLNHVEERLNTIRQMKRKYG
DSEESILEHYQNVVKELDESMFSGAKQERLEKELDAASEQVSDLADQLSTIRQAHAVVLEEAIVTQLKDLYLDKTVFKVV
VEEVKPYELGRDMVTFYISTNPGEEPKPLTKVASGGELSRVMLGMKSIFSESQGITSIIFDEVDTGVSGRVAQAIANKIH
QIATDSQVLCITHLPQVAAAADHHYFIEKNVVDERTQTTVYPLAEVQRIDEVARMLAGEVITDLSKQHAKELLNMSTN

Nucleotide


Download         Length: 1677 bp        

>NTDB_id=360291 FA707_RS02710 WP_136952778.1 572993..574669(+) (recN) [Vagococcus zengguangii strain MN-17]
ATGTTAGAAGAACTAGTCATTAAAAATTTTGCGATTATTTCAGATTTACGGTTGTCCTTTGAAAAAGGGATGACCGTTTT
AACTGGTGAGACCGGTGCCGGTAAATCGATTATTATCGATGCAGTTGGCCTATTAGTTGGCGGACGTGGTTCAGCTGATT
TTATTCGCCACGGGGAAGATAAATCGATTTTAGAAGGGCAATTTTTTGTCAATCAACGTGTTTTACCAGAACTGCAAGAA
GTAATGGAAAACCTAGGAATTGAGATGGATGATCCGACGGTGATTATTTCACGAACACTTTTTAGAAGCGGAAAAAATAT
TTGTCGTGTTAATAATCAACTAGTCAATACGACGGCATTGAAGCAAATTGGACAATACTTAGTCGATATTCATGGTCAGC
ATGAACACCAAGAGTTGATGAATTCTGAGCGTCATATCGGTTACTTAGATCAATTTGCTAGTCAAGAAATTCAGCCGGTT
TTAACTGAGTATCAAACAGCTTTTCAACAACAGCAAACATTAGCTCGTCAATTAAGACAGCTAGAAACAAATGAAAAAGA
ATTTGTTCAACGTATGGATATGTTGAATTTTCAGCGTGAAGAAATTGAAACCGCAGAAATAGTCATTGGTGAAGAACAAA
AATTGCTTGAAGAACGCCAAATGTTAGTCAATCACCAAAAAATTACGGATGCCTTAAACATGAGCTATCAGTTTATTCAA
AACGATGAGATGAATAGTTTATCCAATATCGGTCAGGCGATGTCAGAGCTAGAAACAATTAGTGATTTGACCGAAGACTT
TAAAACTTTATACGAAGAAGTGTCGTCTAGTTATTATCAATTAGAAGAAGCTGCTCGCACGATTCAAAGTGAATTGAGTG
GCATGGAGATGGATGAAGAGCGTTTGAATCATGTCGAAGAACGCTTGAATACTATTCGCCAAATGAAACGTAAGTACGGG
GATTCTGAAGAAAGTATTTTGGAACATTATCAAAATGTTGTAAAAGAATTGGACGAATCAATGTTTAGTGGTGCCAAACA
AGAACGTCTTGAAAAAGAATTAGACGCAGCAAGTGAGCAAGTATCGGACTTAGCGGATCAATTATCAACGATTCGTCAAG
CTCATGCGGTCGTATTAGAAGAAGCAATCGTTACCCAACTAAAAGACTTGTATTTAGATAAAACGGTCTTTAAAGTGGTG
GTTGAGGAAGTGAAACCGTATGAACTAGGTCGTGATATGGTCACGTTCTATATTAGTACCAATCCTGGTGAAGAACCAAA
ACCGTTAACGAAAGTTGCTTCAGGTGGCGAGTTGTCACGTGTCATGTTAGGAATGAAGAGTATTTTCTCTGAATCACAAG
GGATTACTAGTATTATCTTTGATGAAGTCGATACCGGTGTTAGTGGCCGAGTTGCTCAAGCTATTGCTAATAAGATTCAT
CAAATTGCGACTGACTCGCAAGTCTTATGTATTACGCATTTGCCACAAGTAGCCGCTGCAGCGGATCATCATTACTTTAT
TGAGAAAAATGTGGTCGATGAACGTACACAAACAACTGTTTATCCATTAGCTGAAGTGCAACGAATTGATGAGGTTGCTC
GTATGTTAGCCGGTGAGGTCATCACAGACTTATCAAAACAACATGCGAAAGAACTCTTAAATATGTCAACAAATTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4D7CU80

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.601

100

0.498

Multiple sequence alignment