Detailed information NTG0360273

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GUU88_RS16785
• Genome accession: NZ_CP047594
• Coordinates: 3455959..3456951 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain LD27-1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3450959..3461951

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GUU88_RS16765 (GUU88_16765)	otnK	3451735..3452901 (+)	1167	WP_001393459.1	3-oxo-tetronate kinase	-
GUU88_RS16770 (GUU88_16770)	ygbL	3452993..3453631 (+)	639	WP_001278994.1	aldolase	-
GUU88_RS16775 (GUU88_16775)	ygbM	3453636..3454412 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
GUU88_RS16780 (GUU88_16780)	ygbN	3454501..3455865 (+)	1365	WP_000104441.1	GntP family transporter	-
GUU88_RS16785 (GUU88_16785)	rpoS	3455959..3456951 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
GUU88_RS16790 (GUU88_16790)	nlpD	3457014..3458108 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
GUU88_RS16795 (GUU88_16795)	pcm	3458293..3458919 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
GUU88_RS16800 (GUU88_16800)	surE	3458913..3459674 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
GUU88_RS16805 (GUU88_16805)	truD	3459655..3460704 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
GUU88_RS16810 (GUU88_16810)	ispF	3460701..3461180 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GUU88_RS16815 (GUU88_16815)	ispD	3461180..3461890 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=360273 GUU88_RS16785 WP_000081550.1 3455959..3456951(-) (rpoS) [Escherichia coli strain LD27-1]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=360273 GUU88_RS16785 WP_000081550.1 3455959..3456951(-) (rpoS) [Escherichia coli strain LD27-1]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715