Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   FA954_RS03500 Genome accession   NZ_CP039710
Coordinates   682686..683639 (+) Length   317 a.a.
NCBI ID   WP_138614870.1    Uniprot ID   -
Organism   Thermoactinomyces vulgaris strain 2H     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 677686..688639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FA954_RS03465 (FA954_03465) - 677689..678447 (+) 759 WP_062843299.1 DeoR/GlpR family DNA-binding transcription regulator -
  FA954_RS03470 (FA954_03470) - 678550..679266 (+) 717 WP_309485142.1 radical SAM protein -
  FA954_RS03475 (FA954_03475) queC 679336..679974 (+) 639 WP_049720600.1 7-cyano-7-deazaguanine synthase QueC -
  FA954_RS03480 (FA954_03480) - 679980..680387 (+) 408 WP_037996299.1 6-carboxytetrahydropterin synthase -
  FA954_RS03485 (FA954_03485) queF 680384..680875 (+) 492 WP_037996297.1 preQ(1) synthase -
  FA954_RS03490 (FA954_03490) - 680932..681375 (+) 444 WP_138614868.1 BrxA/BrxB family bacilliredoxin -
  FA954_RS03495 (FA954_03495) - 681479..682483 (+) 1005 WP_138614869.1 hypothetical protein -
  FA954_RS03500 (FA954_03500) ceuB 682686..683639 (+) 954 WP_138614870.1 ABC transporter permease Machinery gene
  FA954_RS03505 (FA954_03505) - 683629..684576 (+) 948 WP_138614871.1 iron chelate uptake ABC transporter family permease subunit -
  FA954_RS03510 (FA954_03510) - 684573..685331 (+) 759 WP_138614872.1 ABC transporter ATP-binding protein -
  FA954_RS03515 (FA954_03515) - 685483..686424 (+) 942 WP_138614873.1 siderophore ABC transporter substrate-binding protein -
  FA954_RS03520 (FA954_03520) - 686469..687185 (-) 717 WP_138614874.1 alpha/beta hydrolase-fold protein -

Sequence


Protein


Download         Length: 317 a.a.        Molecular weight: 35303.60 Da        Isoelectric Point: 9.4929

>NTDB_id=360265 FA954_RS03500 WP_138614870.1 682686..683639(+) (ceuB) [Thermoactinomyces vulgaris strain 2H]
MKKRYLILILLILSVISLFIGVKEITLQGLFKLDQEETEILLISRIPRLISILISGVSISICGLIMQQISQNKFVSPTTA
GTMDSARLGILISMLWFGSASLLVKISIAFLFALAGTLLFMKILDKIKLKDVIFVPLVGLMFGNIISSASTFFAYKHDLI
QNMSSWLQGDFSMMMQGRYEILYISIPLMLIAYFYADRFTIAGMGEEFARNLGLNYKQVIHVGLIIVAMITSSVVLTVGM
IPFLGLIVPNIVSIYYGDHVRKNLPYTALFGAIFVLACDILGRIVIYPFEVSISLTIGVIGSAIFLYLLMRSRSYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=360265 FA954_RS03500 WP_138614870.1 682686..683639(+) (ceuB) [Thermoactinomyces vulgaris strain 2H]
ATGAAAAAAAGATATTTAATTTTGATTCTGCTGATTTTATCCGTCATTTCACTGTTTATTGGTGTGAAAGAGATTACGTT
GCAAGGTTTGTTCAAGCTGGATCAGGAGGAGACAGAGATTCTTTTGATCAGCCGCATTCCAAGATTGATCAGCATCCTGA
TTTCCGGTGTCAGTATCAGTATATGCGGGCTGATTATGCAACAGATCAGCCAAAATAAATTTGTATCTCCCACAACGGCA
GGGACCATGGATTCAGCCCGCTTGGGCATTTTGATCTCCATGCTTTGGTTCGGTTCGGCAAGTTTATTGGTCAAAATCAG
CATCGCATTTCTCTTTGCGCTGGCTGGAACGCTGTTGTTTATGAAAATCCTTGACAAGATCAAACTGAAAGATGTGATTT
TTGTTCCCTTGGTCGGTTTGATGTTTGGGAATATTATCAGTTCGGCTTCCACTTTTTTTGCTTATAAACATGATCTCATT
CAAAATATGTCAAGCTGGCTGCAAGGGGACTTTTCCATGATGATGCAAGGACGGTATGAAATTTTGTATATCAGCATTCC
GTTGATGTTGATTGCATATTTTTATGCCGATCGTTTTACCATTGCAGGCATGGGAGAAGAATTTGCAAGGAATTTGGGGT
TGAATTACAAACAAGTCATTCATGTCGGTTTAATCATTGTGGCAATGATCACATCTTCTGTTGTTCTTACGGTTGGAATG
ATTCCTTTTCTGGGATTGATTGTTCCCAACATCGTCTCCATTTACTATGGCGACCATGTGAGGAAAAACCTCCCGTACAC
GGCTCTTTTTGGTGCCATATTTGTTCTGGCTTGCGACATCCTGGGCCGGATTGTCATTTATCCGTTTGAAGTCTCGATCA
GTCTTACCATTGGTGTAATCGGCAGCGCCATTTTCCTGTACTTGTTAATGAGGAGCAGATCGTATGAGTCATAG

Domains


Predicted by InterproScan.

(9-311)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

56.869

98.738

0.562


Multiple sequence alignment