Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FA954_RS00560 Genome accession   NZ_CP039710
Coordinates   83913..85286 (-) Length   457 a.a.
NCBI ID   WP_138614812.1    Uniprot ID   -
Organism   Thermoactinomyces vulgaris strain 2H     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 78913..90286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FA954_RS00535 (FA954_00535) - 79596..80690 (-) 1095 WP_037996994.1 PIN/TRAM domain-containing protein -
  FA954_RS00540 (FA954_00540) - 80813..81310 (-) 498 WP_231564634.1 CarD family transcriptional regulator -
  FA954_RS00545 (FA954_00545) - 81583..81978 (+) 396 WP_037996988.1 hypothetical protein -
  FA954_RS00550 (FA954_00550) pssA 82026..82736 (-) 711 WP_037996982.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  FA954_RS00555 (FA954_00555) disA 82839..83867 (-) 1029 WP_049720835.1 DNA integrity scanning diadenylate cyclase DisA -
  FA954_RS00560 (FA954_00560) radA 83913..85286 (-) 1374 WP_138614812.1 DNA repair protein RadA Machinery gene
  FA954_RS00565 (FA954_00565) - 85494..87941 (-) 2448 WP_037996976.1 ATP-dependent Clp protease ATP-binding subunit -
  FA954_RS00570 (FA954_00570) - 87974..89050 (-) 1077 WP_037996974.1 protein arginine kinase -
  FA954_RS00575 (FA954_00575) - 89063..89581 (-) 519 WP_037996971.1 UvrB/UvrC motif-containing protein -
  FA954_RS00580 (FA954_00580) - 89588..90058 (-) 471 WP_037996967.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49891.51 Da        Isoelectric Point: 6.0793

>NTDB_id=360255 FA954_RS00560 WP_138614812.1 83913..85286(-) (radA) [Thermoactinomyces vulgaris strain 2H]
MAKKKTKFVCQECGYETPKWMGRCPGCHEWNTMVEELNSESSTVPGTGMHRKSKREKAIPITQVEKLDQPRSDTGIRELN
RVLGGGLVPGSFVLVGGDPGIGKSTLLLQATHELARRGLSVLYVSGEESAEQIRLRADRLDALSDRLLVVSETDLTAVEL
LMDEVRPKLMVIDSIQTMFHPDIASAPGSVAQVRECTGQLMRWAKEQNIAIIIVGHVTKSGSLAGPRMLEHMVDCVLYFE
GERHHTYRVLRAVKNRFGSTNEIGVFEMKEEGLAEVENPSELFLSGRPVGAPGTAVTASMEGTRPVLVELQALVAPTSFA
TPKRMAAGIDYNRVTMIMAVLEKRLGLFLQNYDAYINVVGGVRIDEPAVDLSVAVSLASSFRDVAVSPFDLFIGEVGLTG
EVRGVSRIEQRVAEAHNMGFKRVILPEKNCQGWTPPNGIELIGVKTLEEALEVALGG

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=360255 FA954_RS00560 WP_138614812.1 83913..85286(-) (radA) [Thermoactinomyces vulgaris strain 2H]
ATGGCGAAGAAAAAAACAAAGTTTGTTTGTCAGGAATGCGGCTATGAAACGCCGAAATGGATGGGCCGGTGCCCCGGCTG
TCATGAATGGAACACCATGGTGGAAGAGCTCAACAGCGAAAGTTCAACCGTTCCCGGTACCGGAATGCACAGAAAGAGCA
AACGGGAAAAAGCCATTCCGATTACGCAAGTGGAGAAGCTGGATCAGCCTCGTTCTGACACCGGGATCAGAGAGTTGAAC
CGGGTATTGGGCGGAGGATTGGTGCCGGGTTCTTTTGTTTTGGTGGGTGGAGATCCGGGAATCGGAAAGTCGACTCTGCT
TTTGCAGGCGACGCATGAACTGGCAAGGCGGGGATTGTCCGTTTTATACGTGTCAGGAGAAGAGTCCGCGGAACAGATCC
GGTTGCGTGCTGACCGGCTGGATGCTTTGAGCGACCGTTTGTTGGTGGTATCCGAAACGGATTTGACGGCCGTTGAATTG
TTGATGGACGAAGTGCGGCCGAAATTGATGGTGATCGACTCAATTCAAACCATGTTTCATCCGGATATTGCTTCAGCGCC
GGGAAGTGTCGCTCAGGTTCGCGAATGCACCGGACAATTGATGCGGTGGGCCAAGGAACAAAACATTGCGATCATCATCG
TGGGGCATGTGACCAAGTCGGGGTCGCTGGCCGGACCGAGGATGCTTGAACACATGGTTGACTGCGTTTTATATTTTGAG
GGGGAACGCCATCACACATACCGCGTTTTGCGTGCGGTCAAAAACCGCTTTGGTTCCACGAATGAAATAGGTGTTTTTGA
AATGAAGGAAGAAGGATTGGCGGAAGTCGAAAATCCTTCGGAGTTGTTTTTGTCGGGTCGTCCGGTGGGAGCGCCGGGGA
CGGCTGTGACGGCAAGTATGGAAGGAACCCGCCCGGTTTTGGTCGAATTGCAGGCATTGGTGGCTCCGACGAGTTTTGCC
ACCCCCAAACGGATGGCAGCCGGCATCGATTATAACCGGGTTACGATGATCATGGCGGTTTTGGAAAAGAGATTGGGGCT
TTTCTTGCAAAACTATGATGCTTATATCAACGTTGTAGGAGGCGTACGCATTGACGAACCGGCCGTTGATCTCAGTGTGG
CCGTCAGTCTGGCATCCAGTTTTCGGGACGTGGCCGTATCGCCGTTTGATTTGTTTATCGGTGAAGTGGGACTGACCGGG
GAAGTGAGAGGGGTCTCACGGATTGAACAACGCGTGGCCGAAGCGCATAACATGGGTTTTAAAAGAGTCATTCTCCCCGA
GAAAAATTGTCAGGGATGGACGCCTCCGAACGGGATCGAACTAATCGGGGTCAAAACGTTGGAAGAAGCATTAGAAGTGG
CGTTGGGAGGGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(72-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

62.445

100

0.626
  radA Streptococcus mitis NCTC 12261

55.604

99.562

0.554
  radA Streptococcus mitis SK321

55.604

99.562

0.554
  radA Streptococcus pneumoniae Rx1

55.385

99.562

0.551
  radA Streptococcus pneumoniae D39

55.385

99.562

0.551
  radA Streptococcus pneumoniae R6

55.385

99.562

0.551
  radA Streptococcus pneumoniae TIGR4

55.385

99.562

0.551

Multiple sequence alignment