Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   GQS72_RS14500 Genome accession   NZ_CP047592
Coordinates   3134338..3134667 (+) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain INP-43     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3129338..3139667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQS72_RS14485 (GQS72_14485) - 3130038..3130997 (+) 960 WP_004350973.1 UDP-glucose 4-epimerase family protein -
  GQS72_RS14490 (GQS72_14490) - 3130994..3132019 (+) 1026 WP_009313766.1 MraY family glycosyltransferase -
  GQS72_RS14495 (GQS72_14495) - 3132150..3134147 (+) 1998 WP_009313767.1 polysaccharide biosynthesis protein -
  GQS72_RS14500 (GQS72_14500) comEA/comE1 3134338..3134667 (+) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  GQS72_RS14510 (GQS72_14510) - 3134884..3136080 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  GQS72_RS14515 (GQS72_14515) uvrB 3136268..3138280 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=360178 GQS72_RS14500 WP_003091430.1 3134338..3134667(+) (comEA/comE1) [Pseudomonas aeruginosa strain INP-43]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=360178 GQS72_RS14500 WP_003091430.1 3134338..3134667(+) (comEA/comE1) [Pseudomonas aeruginosa strain INP-43]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385

Multiple sequence alignment