Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   I33_RS13265 Genome accession   NC_017195
Coordinates   2662237..2662932 (-) Length   231 a.a.
NCBI ID   WP_014477551.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis str. RO-NN-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2657237..2667932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I33_RS13240 (I33_2848) minD 2658173..2658979 (-) 807 WP_004398624.1 septum site-determining protein MinD -
  I33_RS13245 (I33_2849) minC 2658981..2659661 (-) 681 WP_014477549.1 septum site-determining protein MinC -
  I33_RS13250 (I33_2850) mreD 2659714..2660232 (-) 519 WP_014477550.1 rod shape-determining protein MreD -
  I33_RS13255 (I33_2851) mreC 2660229..2661101 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  I33_RS13260 (I33_2852) mreB 2661132..2662145 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  I33_RS13265 (I33_2853) ysxA/radC 2662237..2662932 (-) 696 WP_014477551.1 DNA repair protein RadC Machinery gene
  I33_RS13270 (I33_2854) maf 2662969..2663538 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  I33_RS13275 (I33_2855) spoIIB 2663691..2664689 (-) 999 WP_014477552.1 stage II sporulation protein SpoIIB -
  I33_RS13280 (I33_2856) comC 2664823..2665569 (-) 747 WP_014477553.1 prepilin peptidase Machinery gene
  I33_RS13285 (I33_2857) folC 2665710..2667002 (-) 1293 WP_014477554.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26160.50 Da        Isoelectric Point: 7.9285

>NTDB_id=36017 I33_RS13265 WP_014477551.1 2662237..2662932(-) (ysxA/radC) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
MVIHDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICIHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=36017 I33_RS13265 WP_014477551.1 2662237..2662932(-) (ysxA/radC) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGAGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACAGGCTGCTGCGCTCATTTGACGGGCTGCGTCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCTGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTATTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGGCGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

99.567

100

0.996
  radC Streptococcus pneumoniae TIGR4

47.619

90.909

0.433
  radC Streptococcus pneumoniae R6

47.143

90.909

0.429
  radC Streptococcus pneumoniae D39

47.143

90.909

0.429
  radC Streptococcus gordonii str. Challis substr. CH1

46.19

90.909

0.42

Multiple sequence alignment