Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdL   Type   Machinery gene
Locus tag   ARCPR_RS03600 Genome accession   NC_013741
Coordinates   617028..618569 (-) Length   513 a.a.
NCBI ID   WP_012940121.1    Uniprot ID   -
Organism   Archaeoglobus profundus DSM 5631     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 612028..623569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ARCPR_RS03575 (Arcpr_0716) - 612427..612906 (+) 480 WP_012940116.1 hypothetical protein -
  ARCPR_RS03580 (Arcpr_0717) - 612903..613295 (+) 393 WP_012940117.1 hypothetical protein -
  ARCPR_RS03585 (Arcpr_0718) - 613288..613941 (+) 654 WP_012940118.1 hypothetical protein -
  ARCPR_RS03590 (Arcpr_0719) - 613922..615190 (+) 1269 WP_012940119.1 hypothetical protein -
  ARCPR_RS03595 (Arcpr_0720) - 615174..617027 (-) 1854 WP_012940120.1 type II secretion system F family protein -
  ARCPR_RS03600 (Arcpr_0721) epdL 617028..618569 (-) 1542 WP_012940121.1 type II/IV secretion system ATPase subunit Machinery gene
  ARCPR_RS03605 (Arcpr_0722) - 618596..619279 (-) 684 WP_012940122.1 RAD55 family ATPase -
  ARCPR_RS03610 (Arcpr_0723) - 619368..620495 (+) 1128 WP_012940123.1 TIGR04053 family radical SAM/SPASM domain-containing protein -
  ARCPR_RS03615 (Arcpr_0724) - 620499..621104 (+) 606 WP_012940124.1 METTL5 family protein -
  ARCPR_RS03620 (Arcpr_0725) - 621128..621388 (+) 261 WP_012940125.1 RpoL/Rpb11 RNA polymerase subunit family protein -

Sequence

Protein


Download         Length: 513 a.a.        Molecular weight: 59915.85 Da        Isoelectric Point: 6.0306

>NTDB_id=36017 ARCPR_RS03600 WP_012940121.1 617028..618569(-) (epdL) [Archaeoglobus profundus DSM 5631]
MYEERALRVIDRAKRVHKILKFDKELVSYVPEEGWRVVEEYWLMEPFSKVYIIYNDDLSDYKYVVAEPELNDFELELLKW
LKDELISYLESFEGKGEKEEIVKSAVDKLLKDLNVKLEEESYFKILYYIIRDFVYYGKLTPLMFDRKLEDISCNGYNKPV
FVFHRDYTNLETNLEFHQDELDALVIRLAQISGKHISLAEPMVDAALPDGSRIQMTLGREVSDHGSTFTIRKFRDEPLTP
VDLIAWKTFSSEQMAYLWLCIENRKNLIFAGGTASGKTTSMNAVSLFIPRKSKIVTIEDTREVMLPHENWIPLVTREAFG
ERGKIEMYDLLRAALRQRPEYIIVGEVRGREALTLFQAMATGHTTYSTLHADSVSGAIHRLESPPIEVPRPMLEALNIIS
VQSQVYIEGKRVRRNVEIAEIVHLDPHTKMLRTSTIFQWDSVKDRHVLVGSSKVLEDIRMHRGWSRSELEEELERRKAIL
EFMVEHNIRDFRSVSDIIHTYQTNPEKVLRKVS

Nucleotide


Download         Length: 1542 bp        

>NTDB_id=36017 ARCPR_RS03600 WP_012940121.1 617028..618569(-) (epdL) [Archaeoglobus profundus DSM 5631]
GTGTATGAGGAGAGAGCTTTAAGGGTAATCGACAGAGCTAAAAGAGTACACAAAATTTTGAAATTCGATAAAGAGCTAGT
GTCATACGTACCTGAAGAAGGTTGGAGAGTTGTTGAGGAATATTGGCTTATGGAACCATTCAGCAAAGTGTATATCATAT
ACAACGATGATTTGAGCGACTACAAGTACGTGGTTGCGGAGCCAGAACTAAACGATTTCGAACTTGAGTTGCTAAAGTGG
CTAAAGGATGAATTAATAAGCTACTTAGAGAGCTTTGAAGGTAAGGGTGAAAAGGAAGAGATTGTCAAATCTGCTGTCGA
TAAGTTGTTAAAGGACTTGAACGTTAAGCTGGAAGAAGAATCATATTTTAAGATCTTGTATTATATCATCAGGGATTTTG
TCTACTACGGTAAGCTGACTCCTCTCATGTTTGACAGAAAGCTTGAGGATATATCTTGCAATGGATACAATAAGCCTGTC
TTTGTCTTCCATAGGGATTATACAAACCTCGAAACCAATTTAGAATTTCATCAAGATGAGCTCGACGCACTAGTCATAAG
ATTGGCTCAGATCAGTGGTAAGCATATAAGCTTAGCAGAACCTATGGTTGACGCTGCCCTTCCGGATGGCTCAAGAATTC
AGATGACTCTTGGTAGGGAAGTATCTGATCACGGTTCCACCTTTACGATTAGGAAGTTTAGAGATGAGCCGTTGACACCT
GTAGATTTGATAGCTTGGAAGACATTTTCATCAGAGCAGATGGCTTATCTCTGGCTCTGTATAGAGAATAGGAAAAACTT
AATATTTGCCGGTGGAACTGCAAGCGGTAAGACTACATCTATGAATGCCGTTTCTCTTTTCATACCGAGAAAGTCGAAGA
TCGTGACGATAGAGGATACGAGAGAAGTTATGTTACCTCACGAGAACTGGATCCCCCTTGTTACGCGAGAGGCTTTTGGT
GAGAGGGGTAAGATAGAGATGTACGACTTGCTCAGAGCAGCTTTGAGGCAGAGACCCGAATACATTATAGTTGGAGAAGT
CAGAGGTAGAGAAGCTTTGACACTCTTTCAGGCAATGGCAACAGGACACACGACATATTCCACACTTCATGCAGATAGTG
TTAGCGGTGCGATACACCGTCTCGAAAGTCCACCTATTGAAGTCCCCCGTCCCATGCTTGAAGCTCTAAACATAATAAGC
GTTCAATCTCAGGTGTATATAGAAGGAAAAAGGGTTAGGAGGAATGTAGAGATTGCAGAGATTGTTCATCTCGATCCTCA
TACAAAGATGCTGAGAACATCCACGATTTTTCAGTGGGATAGCGTTAAAGATAGACATGTACTTGTCGGAAGTTCGAAGG
TGCTTGAAGATATAAGAATGCACAGGGGCTGGAGCCGTTCAGAACTTGAGGAGGAGCTTGAAAGAAGGAAAGCCATACTA
GAGTTTATGGTTGAACACAACATAAGGGACTTTAGAAGTGTAAGCGACATAATACACACCTACCAAACAAATCCAGAAAA
AGTCCTCAGAAAGGTGTCGTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(145-383)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdL Methanoculleus thermophilus strain DSM 2373

51.22

95.906

0.491

Multiple sequence alignment