Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   FAZ90_RS02460 Genome accession   NZ_CP039700
Coordinates   479405..480385 (+) Length   326 a.a.
NCBI ID   WP_010435803.1    Uniprot ID   A0AAN0N9Q1
Organism   Vibrio cyclitrophicus strain ECSMB14105     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 470332..500777 479405..480385 within 0


Gene organization within MGE regions


Location: 470332..500777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAZ90_RS02415 (FAZ90_02415) - 471052..472692 (+) 1641 WP_010435781.1 CTP synthase -
  FAZ90_RS02420 (FAZ90_02420) eno 472777..474075 (+) 1299 WP_010435783.1 phosphopyruvate hydratase -
  FAZ90_RS02425 (FAZ90_02425) ftsB 474359..474640 (+) 282 WP_010435786.1 cell division protein FtsB -
  FAZ90_RS02430 (FAZ90_02430) ispD 474640..475341 (+) 702 WP_010435790.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  FAZ90_RS02435 (FAZ90_02435) ispF 475344..475823 (+) 480 WP_010435793.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  FAZ90_RS02440 (FAZ90_02440) truD 475846..476892 (+) 1047 WP_010435794.1 tRNA pseudouridine(13) synthase TruD -
  FAZ90_RS02445 (FAZ90_02445) surE 476968..477711 (+) 744 WP_010435796.1 5'/3'-nucleotidase SurE -
  FAZ90_RS02450 (FAZ90_02450) - 477712..478338 (+) 627 WP_010435798.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  FAZ90_RS02455 (FAZ90_02455) nlpD 478374..479306 (+) 933 WP_016768192.1 murein hydrolase activator NlpD -
  FAZ90_RS02460 (FAZ90_02460) rpoS 479405..480385 (+) 981 WP_010435803.1 RNA polymerase sigma factor RpoS Regulator
  FAZ90_RS02465 (FAZ90_02465) mutS 480495..483080 (-) 2586 WP_046209627.1 DNA mismatch repair protein MutS -
  FAZ90_RS02470 (FAZ90_02470) - 483255..484589 (+) 1335 WP_017084310.1 tyrosine-type recombinase/integrase -
  FAZ90_RS02475 (FAZ90_02475) - 484643..485719 (-) 1077 WP_046209628.1 hypothetical protein -
  FAZ90_RS02480 (FAZ90_02480) - 486227..486949 (+) 723 WP_046209629.1 YagK/YfjJ domain-containing protein -
  FAZ90_RS02485 (FAZ90_02485) - 487184..487684 (-) 501 WP_046209630.1 lecithin retinol acyltransferase family protein -
  FAZ90_RS02490 (FAZ90_02490) - 487786..488346 (-) 561 WP_017084306.1 tyrosine-type recombinase/integrase -
  FAZ90_RS02495 (FAZ90_02495) - 488533..488976 (-) 444 WP_046209631.1 DUF2787 domain-containing protein -
  FAZ90_RS02500 (FAZ90_02500) - 489004..489438 (-) 435 WP_046209632.1 DUF2787 family protein -
  FAZ90_RS02505 (FAZ90_02505) radC 489435..489911 (-) 477 WP_046209633.1 RadC family protein -
  FAZ90_RS02510 (FAZ90_02510) - 490133..490570 (+) 438 WP_046209634.1 RNase H family protein -
  FAZ90_RS02515 (FAZ90_02515) - 490690..490911 (+) 222 WP_167493237.1 AlpA family transcriptional regulator -
  FAZ90_RS02520 (FAZ90_02520) - 491180..493525 (-) 2346 WP_029836956.1 AAA family ATPase -
  FAZ90_RS02525 (FAZ90_02525) - 494062..494610 (+) 549 WP_046209635.1 hypothetical protein -
  FAZ90_RS02530 (FAZ90_02530) - 494863..495915 (-) 1053 WP_046209702.1 IS91 family transposase -
  FAZ90_RS02535 (FAZ90_02535) - 495912..496799 (-) 888 WP_046209703.1 tyrosine-type recombinase/integrase -
  FAZ90_RS02540 (FAZ90_02540) - 497006..497452 (+) 447 WP_046209705.1 hypothetical protein -
  FAZ90_RS02545 (FAZ90_02545) - 497596..498435 (+) 840 WP_046209704.1 AbiJ-NTD4 domain-containing protein -
  FAZ90_RS02550 (FAZ90_02550) - 498671..498874 (-) 204 WP_004736343.1 hypothetical protein -
  FAZ90_RS02555 (FAZ90_02555) - 499199..500113 (-) 915 WP_046209153.1 LPD25 domain-containing protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 37267.52 Da        Isoelectric Point: 5.2707

>NTDB_id=360169 FAZ90_RS02460 WP_010435803.1 479405..480385(+) (rpoS) [Vibrio cyclitrophicus strain ECSMB14105]
MSISNAVTKEEFDLNQVTTESETLGKAKRTVTKKTEAKEEAEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIATKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREICLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide


Download         Length: 981 bp        

>NTDB_id=360169 FAZ90_RS02460 WP_010435803.1 479405..480385(+) (rpoS) [Vibrio cyclitrophicus strain ECSMB14105]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTAACCAAGTAACCACGGAATCGGAAACACTTGGAAAAGC
AAAACGAACAGTCACTAAGAAAACCGAAGCGAAAGAAGAAGCTGAAGTTACGTCTAAAAGTTTAGATGCTACTCAACTCT
ACTTAGGCGAAATTGGTTTCTCACCACTACTAACCGCTGAAGAAGAAGTGCTTTATGCACGTCGAGCTCTACGCGGTGAT
GAAGCGGCCCGCAAACGCATGATTGAAAGTAACCTGCGTTTGGTGGTTAAAATATCTCGTCGTTATAGCAACCGTGGTTT
GGCACTTCTCGATCTAATTGAAGAAGGCAACCTAGGCTTGATTCGCGCCGTAGAGAAGTTTGACCCAGAGCGAGGTTTCC
GCTTTTCAACTTACGCGACATGGTGGATTCGTCAAACCATTGAACGTGCTTTAATGAATCAGACTCGCACCATCCGTTTG
CCAATCCATGTTGTGAAAGAGCTGAACATCTACCTACGTACAGCAAGAGAGTTATCACAAAAGCTTGACCATGAACCAAC
GGCTGAAGAAATTGCTACTAAGCTAGACAAGCCAGTTGGTGATGTGAGCAAGATGCTTCGTTTAAACGAGCGAGTGAGCT
CCGTTGATACGCCAATTGGTGGTGACGGTGAGAAAGCACTGTTGGATATTATTCCGGACATCAACAATTCCGATCCTGAG
GTTTCAACTCAAGATAGCGATATCAAGAACTCGTTGATTTTCTGGCTAGATGAGCTGAACCCGAAACAGAAAGAGGTGCT
TGCACGTCGCTTTGGACTACTTGGCTATGAACCGTCAACGTTAGAAGAAGTAGGCCGTGAAATCTGCCTGACTCGTGAAC
GTGTTCGTCAAATCCAAGTTGAAGGTCTTCGCCGTCTACGAGAGATTCTGATCAAGCAAGGTCTGAATATGGAAAACCTG
TTTAACGTTGAAAACGACTAA

Domains

Predicted by InterproScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(49-82)

Sigma-70 region 2 (Sigma70_r2)

(87-156)

Sigma-70, region 4 (Sigma70_r4)

(255-308)

Sigma-70 region 3 (Sigma70_r3)

(167-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

81.437

100

0.834

Multiple sequence alignment