Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   E4167_RS11730 Genome accession   NZ_CP039631
Coordinates   2590323..2591693 (+) Length   456 a.a.
NCBI ID   WP_155677741.1    Uniprot ID   A0A5Q2U7F2
Organism   Pseudomonas veronii strain Pvy     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2585323..2596693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4167_RS11705 (E4167_12300) - 2585416..2586129 (-) 714 WP_155677737.1 LuxR family transcriptional regulator -
  E4167_RS11710 (E4167_12305) - 2586533..2587309 (+) 777 WP_046381980.1 ferredoxin--NADP reductase -
  E4167_RS11715 (E4167_12310) mscL 2587355..2587771 (-) 417 WP_017848275.1 large-conductance mechanosensitive channel protein MscL -
  E4167_RS11720 (E4167_12315) katB 2588071..2589600 (+) 1530 WP_240951294.1 catalase KatB -
  E4167_RS11725 (E4167_12320) - 2589739..2590287 (+) 549 WP_017848273.1 ankyrin repeat domain-containing protein -
  E4167_RS11730 (E4167_12325) radA 2590323..2591693 (+) 1371 WP_155677741.1 DNA repair protein RadA Machinery gene
  E4167_RS11735 (E4167_12330) - 2591748..2592116 (-) 369 WP_046482163.1 PilZ domain-containing protein -
  E4167_RS11740 (E4167_12335) - 2592292..2594358 (+) 2067 WP_017848270.1 carbon starvation CstA family protein -
  E4167_RS11745 (E4167_12340) - 2594374..2594571 (+) 198 WP_017737420.1 YbdD/YjiX family protein -
  E4167_RS11750 (E4167_12345) yjiA 2594728..2595687 (+) 960 WP_155677743.1 GTPase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48802.25 Da        Isoelectric Point: 6.8987

>NTDB_id=360109 E4167_RS11730 WP_155677741.1 2590323..2591693(+) (radA) [Pseudomonas veronii strain Pvy]
MAKAKRMYGCTECGATFPKWAGQCTECGAWNTLTETMIESGGAAAPSGRAGWTGQQAQIKTLAEVSVEEVPRFSTASGEV
SDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESII
ATARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYF
EGESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHL
ANPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLS
GEVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=360109 E4167_RS11730 WP_155677741.1 2590323..2591693(+) (radA) [Pseudomonas veronii strain Pvy]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCGACCTTTCCCAAGTGGGCCGGCCAGTGTACCGAGTG
CGGGGCGTGGAACACCCTCACCGAAACCATGATCGAAAGCGGCGGCGCCGCGGCCCCCAGCGGCCGTGCCGGCTGGACCG
GGCAACAGGCGCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAGGAAGTCCCGCGTTTCTCCACCGCGTCCGGTGAGGTT
TCNGACCGCGTGCTGGGCGGTGGCCTGGTGGACGGTTCGGTGGTGCTGATCGGCGGCGACCCCGGTATCGGCAAGTCGAC
CATCCTGTTGCAAACCCTGTGCAGCATCGCCAGCCGCATGCCGGCGTTGTACGTCACCGGCGAAGAATCCCAGCAACAAG
TGGCCATGCGCGCACGCCGCCTGGGCTTGCCCCAGGACCAACTGCGGGTGATGACCGAAACCTGCATCGAAAGCATCATC
GCCACCGCGCGGATCGAAAAGCCCAAGGTCATGGTGATCGACTCGATCCAGACGATTTTCACCGAACAACTGCAATCGGC
CCCGGGCGGCGTGTCCCAGGTGCGTGAGAGCGCGGCGCTGCTGGTGCGCTATGCCAAGCAGAGCGGCACGGCGATTTTCC
TGGTCGGTCACGTGACCAAGGAAGGCGCGCTGGCCGGGCCACGGGTGTTGGAGCACATGGTCGACACCGTGCTGTATTTC
GAAGGCGAGTCCGACGGCCGTTTGCGTTTGCTGCGCGCCGTGAAGAACCGCTTCGGCGCGGTGAACGAGCTGGGCGTATT
CGCCATGACCGACCGCGGGCTGAAAGAAGTCTCCAACCCCTCGGCGATTTTTCTGACCCGTGCCCAGGAAGAAGTCCCCG
GTAGTGTGGTGATGGCAACGTGGGAAGGCACCCGCCCGATGCTGGTGGAAGTCCAGGCGCTGGTGGACGACAGCCATTTG
GCCAACCCGCGTCGAGTGACCCTGGGCCTGGACCAGAACCGCCTGGCGATGCTGCTCGCGGTACTCCACCGGCACGGCGG
CATCCCGACCCATGACCAGGACGTGTTCCTTAACGTGGTGGGCGGGGTCAAGGTGCTGGAGACCGCGTCCGACCTGGCGT
TGATGGCGGCGGTGATGTCCAGCCTGCGCAACCGGCCGCTGCCCCACGACCTGCTGGTGTTCGGCGAAGTTGGCCTGTCG
GGCGAGGTGCGCCCGGTGCCCAGCGGTCAGGAGCGTTTGAAGGAAGCGGCCAAACACGGCTTCAAGCGCGCGATCGTGCC
CAAGGGCAACGCGCCGAAGGAAGCGCCGCCGGGGTTGCAGGTGATCGCGGTGACGCGGCTGGAGCAGGCGTTGGATGCAC
TTTTCGAGTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(83-222)

Subunit ChlI of Mg-chelatase (ChlI)

(354-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Q2U7F2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.345

100

0.496
  radA Streptococcus pneumoniae Rx1

46.855

100

0.474
  radA Streptococcus pneumoniae R6

46.855

100

0.474
  radA Streptococcus pneumoniae TIGR4

46.855

100

0.474
  radA Streptococcus pneumoniae D39

46.855

100

0.474
  radA Streptococcus mitis SK321

47.046

100

0.471
  radA Streptococcus mitis NCTC 12261

46.827

100

0.469

Multiple sequence alignment