Detailed information NTG0360105

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GUJ28_RS18460
• Genome accession: NZ_CP047576
• Coordinates: 3863713..3864705 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 94EC
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3858713..3869705

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GUJ28_RS18430 (GUJ28_18430)	ispD	3858774..3859484 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GUJ28_RS18435 (GUJ28_18435)	ispF	3859484..3859963 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GUJ28_RS18440 (GUJ28_18440)	truD	3859960..3861009 (+)	1050	WP_000568921.1	tRNA pseudouridine(13) synthase TruD	-
GUJ28_RS18445 (GUJ28_18445)	surE	3860990..3861751 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
GUJ28_RS18450 (GUJ28_18450)	pcm	3861745..3862371 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
GUJ28_RS18455 (GUJ28_18455)	nlpD	3862556..3863650 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
GUJ28_RS18460 (GUJ28_18460)	rpoS	3863713..3864705 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
GUJ28_RS18465 (GUJ28_18465)	-	3864826..3865233 (-)	408	WP_160192079.1	MarR family transcriptional regulator	-
GUJ28_RS18470 (GUJ28_18470)	-	3865380..3865973 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
GUJ28_RS18475 (GUJ28_18475)	-	3865973..3867400 (+)	1428	WP_000863235.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
GUJ28_RS18480 (GUJ28_18480)	-	3867411..3867647 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
GUJ28_RS18485 (GUJ28_18485)	ygbN	3867686..3869050 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=360105 GUJ28_RS18460 WP_000081550.1 3863713..3864705(+) (rpoS) [Escherichia coli strain 94EC]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=360105 GUJ28_RS18460 WP_000081550.1 3863713..3864705(+) (rpoS) [Escherichia coli strain 94EC]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715