Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   GUJ28_RS09210 Genome accession   NZ_CP047576
Coordinates   1911836..1912276 (+) Length   146 a.a.
NCBI ID   WP_000360895.1    Uniprot ID   B7LFX5
Organism   Escherichia coli strain 94EC     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1906836..1917276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GUJ28_RS09190 (GUJ28_09190) aroP 1907834..1909207 (+) 1374 WP_001331235.1 aromatic amino acid transporter AroP -
  GUJ28_RS09195 (GUJ28_09195) ampE 1909250..1910104 (-) 855 WP_000172005.1 beta-lactamase regulator AmpE -
  GUJ28_RS09200 (GUJ28_09200) ampD 1910101..1910652 (-) 552 WP_000923721.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  GUJ28_RS09205 (GUJ28_09205) nadC 1910740..1911633 (+) 894 WP_001135174.1 carboxylating nicotinate-nucleotide diphosphorylase -
  GUJ28_RS09210 (GUJ28_09210) pilA 1911836..1912276 (+) 441 WP_000360895.1 prepilin peptidase-dependent pilin Machinery gene
  GUJ28_RS09215 (GUJ28_09215) pilB 1912286..1913671 (+) 1386 WP_001025173.1 type II secretion system protein GspE Machinery gene
  GUJ28_RS09220 (GUJ28_09220) hofC 1913661..1914863 (+) 1203 WP_000157234.1 protein transport protein HofC -
  GUJ28_RS09225 (GUJ28_09225) guaC 1914898..1915941 (-) 1044 WP_001217338.1 GMP reductase -
  GUJ28_RS25510 - 1916097..1916141 (-) 45 WP_120795372.1 protein YacM -
  GUJ28_RS09230 (GUJ28_09230) coaE 1916166..1916786 (+) 621 WP_001269520.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 15602.71 Da        Isoelectric Point: 4.3927

>NTDB_id=360062 GUJ28_RS09210 WP_000360895.1 1911836..1912276(+) (pilA) [Escherichia coli strain 94EC]
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTH
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN

Nucleotide


Download         Length: 441 bp        

>NTDB_id=360062 GUJ28_RS09210 WP_000360895.1 1911836..1912276(+) (pilA) [Escherichia coli strain 94EC]
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCAC
TATGTTTCAGCCATGAGTGTGGCAAAAGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGACTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7LFX5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Haemophilus influenzae 86-028NP

43.089

84.247

0.363