Detailed information NTG0359986

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GTQ78_RS04830
• Genome accession: NZ_CP047571
• Coordinates: 993298..994290 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 2EC1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 988298..999290

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GTQ78_RS04800 (GTQ78_04800)	ispD	988359..989069 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GTQ78_RS04805 (GTQ78_04805)	ispF	989069..989548 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GTQ78_RS04810 (GTQ78_04810)	truD	989545..990594 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
GTQ78_RS04815 (GTQ78_04815)	surE	990575..991336 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
GTQ78_RS04820 (GTQ78_04820)	pcm	991330..991956 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
GTQ78_RS04825 (GTQ78_04825)	nlpD	992141..993235 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
GTQ78_RS04830 (GTQ78_04830)	rpoS	993298..994290 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
GTQ78_RS04835 (GTQ78_04835)	ygbN	994384..995748 (-)	1365	WP_000104441.1	GntP family transporter	-
GTQ78_RS04840 (GTQ78_04840)	ygbM	995837..996613 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
GTQ78_RS04845 (GTQ78_04845)	ygbL	996618..997256 (-)	639	WP_001278994.1	aldolase	-
GTQ78_RS04850 (GTQ78_04850)	otnK	997253..998515 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=359986 GTQ78_RS04830 WP_000081550.1 993298..994290(+) (rpoS) [Escherichia coli strain 2EC1]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=359986 GTQ78_RS04830 WP_000081550.1 993298..994290(+) (rpoS) [Escherichia coli strain 2EC1]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTCTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715