Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   GTW28_RS10655 Genome accession   NZ_CP047485
Coordinates   2112146..2113921 (-) Length   591 a.a.
NCBI ID   WP_004399229.1    Uniprot ID   O34748
Organism   Bacillus subtilis strain BJQ0005     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2107146..2118921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTW28_RS10635 (GTW28_10635) desE 2107517..2108575 (+) 1059 WP_004399588.1 fatty acid desaturase DesE -
  GTW28_RS10640 (GTW28_10640) desK 2108695..2109807 (+) 1113 WP_029318043.1 two-component sensor histidine kinase DesK -
  GTW28_RS10645 (GTW28_10645) desR 2109826..2110425 (+) 600 WP_004399356.1 two-component system response regulator DesR -
  GTW28_RS10650 (GTW28_10650) walN 2111035..2111898 (-) 864 WP_003231267.1 3D domain-containing protein -
  GTW28_RS10655 (GTW28_10655) recQ 2112146..2113921 (-) 1776 WP_004399229.1 DNA helicase RecQ Machinery gene
  GTW28_RS10665 (GTW28_10665) azoJ 2114486..2115112 (-) 627 WP_003231260.1 FMN-dependent NADH-azoreductase AzoJ -
  GTW28_RS10670 (GTW28_10670) stpP 2115263..2115754 (-) 492 WP_003231259.1 TraR/DksA family transcriptional regulator -
  GTW28_RS10675 (GTW28_10675) - 2115829..2116161 (-) 333 WP_003231257.1 hypothetical protein -
  GTW28_RS10680 (GTW28_10680) - 2116239..2116466 (+) 228 WP_004399329.1 hypothetical protein -
  GTW28_RS10685 (GTW28_10685) yocM 2116453..2116929 (-) 477 WP_003231255.1 salt stress-responsive protein YocM -
  GTW28_RS10690 (GTW28_10690) - 2116996..2117259 (+) 264 WP_004399338.1 hypothetical protein -
  GTW28_RS10695 (GTW28_10695) - 2117264..2117497 (+) 234 WP_003231251.1 hypothetical protein -
  GTW28_RS10700 (GTW28_10700) yozO 2117583..2117927 (-) 345 WP_003220141.1 PH domain-containing protein -
  GTW28_RS10705 (GTW28_10705) yozC 2118284..2118487 (-) 204 WP_003231245.1 DUF6501 family protein -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 67352.87 Da        Isoelectric Point: 6.2902

>NTDB_id=359897 GTW28_RS10655 WP_004399229.1 2112146..2113921(-) (recQ) [Bacillus subtilis strain BJQ0005]
MLHRAQSLLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISPLISLMKDQVDALEE
AGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLTSIEFIRILQGIDVPLVAIDEAHCISQWGHDFRPSYRNIEI
LFRELHDKPVIMALTATATPEVHDDICKQLHIQKENTVYTGFSRENLTFKVVKGENKDRFIDEYVQNNRHEAGIVYTATR
KEADRIYERLKRNQVRAGRYHGGLADDVRKEQQERFLNDELQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGR
AGRDGLASECVLLFSPQDIMVQRFLIEQSEHEEKQKQDLKKLRQMVDYCHTEDCLQRFILMYFGEKEPDACGQCGNCTDT
RAAHDVTREAQMVLSCIIRMKERFGKTMVAQVLAGSKNKKVLENGFSDLSTYGILKHQSVGEISDFIEFLISDDFIRMSD
GTFPTLFVSSKGRNVLKGELSVARKEALKAAAITENDELFERLRMVRKEIAAEQGVPPFVVFSDQTLKEMSGKQPVNDDE
LLSIKGVGEQKRAKYGRLFLQEIQAYARMTD

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=359897 GTW28_RS10655 WP_004399229.1 2112146..2113921(-) (recQ) [Bacillus subtilis strain BJQ0005]
ATGTTACATAGAGCCCAATCCCTTCTGGCTCATTATTTTGGTTATGAGAAGTTTCGGAGCGGCCAAGATGAAGCGATCCG
CTTGGTGACGGAAGCGAGGCAAAATACGGCCTGCATTATGCCGACGGGAGGCGGCAAATCGATTTGCTATCAGATTCCGG
CATTAATGTTTGAAGGGACGACGATCGTCATTTCACCGTTGATTTCCTTGATGAAGGATCAAGTTGATGCGTTAGAAGAA
GCGGGGATTAACGCCGCCTACATTAACAGCACACAATCCAATCAGGAAATATATGAGAGGCTGAACGGACTCAAAGAAGG
GGCTTATAAGCTTTTTTACATTACACCAGAGCGACTAACGTCCATAGAGTTTATCCGGATTTTGCAGGGCATAGATGTTC
CTTTGGTCGCAATAGACGAGGCGCATTGTATTTCTCAATGGGGCCATGATTTCAGGCCAAGCTACAGGAATATTGAAATC
TTGTTCCGTGAATTACACGACAAGCCTGTCATCATGGCGTTAACAGCAACAGCCACACCCGAGGTTCATGATGATATTTG
CAAACAGCTGCATATTCAAAAAGAAAACACGGTATATACCGGATTTTCCCGAGAGAATTTAACCTTTAAAGTAGTAAAAG
GAGAAAATAAAGATCGGTTTATAGACGAATATGTGCAAAACAACAGGCATGAAGCAGGAATTGTCTATACAGCGACCAGA
AAAGAAGCTGATCGGATATATGAGAGATTGAAACGAAATCAGGTCAGGGCAGGCCGGTATCATGGAGGTTTGGCTGATGA
TGTGAGAAAAGAGCAGCAGGAAAGATTTCTTAATGATGAGCTTCAAGTGATGGTGGCAACCTCTGCTTTTGGAATGGGTA
TTGATAAATCAAATATCAGATTTGTTCTGCATGCACAAATCCCGAAAGATATGGAAAGCTATTATCAAGAGGCAGGACGA
GCTGGACGGGACGGTCTTGCCAGTGAATGTGTTCTCCTGTTTTCACCGCAGGATATTATGGTGCAGCGCTTCTTAATTGA
GCAATCAGAACATGAAGAGAAACAAAAGCAGGATTTAAAAAAGCTGAGACAAATGGTCGACTACTGTCATACGGAAGATT
GTCTGCAGCGTTTTATCCTTATGTATTTCGGAGAAAAGGAGCCTGATGCGTGCGGACAGTGCGGAAACTGTACCGATACA
AGAGCGGCCCATGACGTGACGCGGGAGGCGCAAATGGTCTTATCTTGTATCATTCGCATGAAAGAACGGTTTGGCAAGAC
GATGGTTGCCCAGGTGCTTGCCGGCTCCAAAAATAAAAAAGTTCTTGAAAACGGCTTTTCCGACCTTTCAACATACGGGA
TATTAAAACACCAATCCGTTGGCGAAATCAGTGATTTTATCGAATTTCTTATTTCTGACGACTTCATCAGGATGTCAGAC
GGAACGTTTCCGACTCTTTTTGTCAGCAGTAAAGGAAGGAATGTGCTGAAAGGAGAATTATCAGTAGCGAGAAAAGAAGC
GTTAAAAGCGGCAGCGATTACTGAAAATGACGAGCTATTTGAACGATTGCGCATGGTTCGGAAAGAAATTGCGGCTGAGC
AGGGTGTTCCGCCATTTGTTGTTTTCTCTGACCAAACGTTAAAAGAAATGTCAGGAAAACAGCCCGTAAATGATGATGAA
CTTTTGTCTATAAAAGGAGTCGGAGAACAAAAAAGAGCAAAATACGGCCGGCTTTTTTTACAAGAAATACAGGCTTATGC
AAGGATGACAGACTAA

Domains

Predicted by InterProScan.

RQC domain (RQC)

(403-507)

RecQ zinc-binding (RecQ_Zn_bind)

(336-398)

DEAD/DEAH box helicase (DEAD)

(21-182)

Helicase conserved C-terminal domain (Helicase_C)

(218-324)

HRDC domain (HRDC)

(518-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O34748

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

100

100

1