Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   GTW28_RS09905 Genome accession   NZ_CP047485
Coordinates   1933203..1933820 (-) Length   205 a.a.
NCBI ID   WP_003238209.1    Uniprot ID   G4NVV3
Organism   Bacillus subtilis strain BJQ0005     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1928203..1938820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTW28_RS09880 (GTW28_09880) yndJ 1928524..1930164 (+) 1641 WP_003231612.1 YndJ family protein -
  GTW28_RS09885 (GTW28_09885) - 1930252..1930566 (+) 315 WP_003245621.1 hypothetical protein -
  GTW28_RS09890 (GTW28_09890) pghL 1930792..1931550 (+) 759 WP_003245793.1 gamma-polyglutamate hydrolase PghL -
  GTW28_RS09895 (GTW28_09895) - 1931577..1932026 (-) 450 WP_003245454.1 YndM family protein -
  GTW28_RS09900 (GTW28_09900) fosB 1932234..1932653 (+) 420 WP_046381053.1 metallothiol transferase FosB -
  GTW28_RS21415 - 1932577..1932916 (+) 340 Protein_1910 hypothetical protein -
  GTW28_RS09905 (GTW28_09905) dinR/lexA 1933203..1933820 (-) 618 WP_003238209.1 transcriptional repressor LexA Regulator
  GTW28_RS09910 (GTW28_09910) yneA 1933970..1934287 (+) 318 WP_159403962.1 cell division suppressor protein YneA -
  GTW28_RS09915 (GTW28_09915) dinL 1934306..1934959 (+) 654 WP_014479938.1 recombinase family protein -
  GTW28_RS09920 (GTW28_09920) ynzC 1935023..1935256 (+) 234 WP_003231595.1 DUF896 domain-containing protein -
  GTW28_RS09925 (GTW28_09925) recP/tkt 1935425..1937428 (+) 2004 WP_014476936.1 transketolase Machinery gene
  GTW28_RS09930 (GTW28_09930) sirA 1937581..1938027 (+) 447 WP_003231591.1 sporulation inhibitor of replication protein SirA -
  GTW28_RS09935 (GTW28_09935) yneF 1938113..1938331 (+) 219 WP_003221221.1 YneF family protein -
  GTW28_RS09940 (GTW28_09940) ynzD 1938405..1938578 (-) 174 WP_010886518.1 aspartyl-phosphate phosphatase YnzD -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22849.36 Da        Isoelectric Point: 5.1450

>NTDB_id=359894 GTW28_RS09905 WP_003238209.1 1933203..1933820(-) (dinR/lexA) [Bacillus subtilis strain BJQ0005]
MTKLSKRQLDILRFIKAEVKSKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDPTKPRAIEILDEEVDIPQSQV
VNVPVIGKVTAGSPITAVENIEEYFPLPDRMVPPDEHVFMLEIMGDSMIDAGILDKDYVIVKQQNTANNGEIVVAMTEDD
EATVKRFYKEDTHIRLQPENPTMEPIILQNVSILGKVIGVFRTVH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=359894 GTW28_RS09905 WP_003238209.1 1933203..1933820(-) (dinR/lexA) [Bacillus subtilis strain BJQ0005]
ATGACGAAGCTATCAAAAAGGCAACTTGATATCCTCCGTTTTATTAAAGCAGAGGTTAAATCAAAAGGATATCCGCCTTC
CGTGAGAGAGATCGGAGAGGCTGTCGGGCTTGCGTCCAGCTCTACTGTCCACGGCCATTTGGCCCGCTTGGAAACAAAAG
GGCTGATCAGACGAGATCCGACAAAACCAAGAGCAATAGAAATTCTTGATGAAGAAGTAGACATTCCGCAAAGCCAGGTC
GTTAATGTACCGGTCATCGGGAAAGTCACGGCGGGATCTCCTATTACAGCAGTAGAAAATATTGAAGAATATTTTCCGCT
CCCAGACCGCATGGTTCCTCCAGACGAGCATGTATTTATGCTGGAGATTATGGGAGACAGTATGATAGATGCTGGTATTC
TCGATAAGGACTATGTCATCGTTAAACAGCAAAACACAGCGAACAATGGGGAAATTGTAGTTGCAATGACAGAAGATGAT
GAAGCAACTGTAAAACGATTCTATAAAGAGGATACCCACATTCGCTTGCAGCCTGAGAACCCAACGATGGAACCTATCAT
TTTGCAGAATGTCAGCATTCTAGGGAAAGTGATTGGCGTGTTCAGAACCGTCCATTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(84-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment