Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   GTW28_RS07070 Genome accession   NZ_CP047485
Coordinates   1333589..1334725 (+) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis strain BJQ0005     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1328589..1339725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTW28_RS07050 (GTW28_07050) uxaA 1329039..1330532 (+) 1494 WP_019712454.1 altronate dehydratase family protein -
  GTW28_RS07055 (GTW28_07055) yjnA 1330571..1331335 (-) 765 WP_014476525.1 sulfite exporter TauE/SafE family protein -
  GTW28_RS07060 (GTW28_07060) bstD 1331559..1332023 (-) 465 WP_014479541.1 DinB family protein -
  GTW28_RS07065 (GTW28_07065) yjoB 1332172..1333443 (+) 1272 WP_003245490.1 ATPase YjoB -
  GTW28_RS07070 (GTW28_07070) rapC 1333589..1334725 (+) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  GTW28_RS07075 (GTW28_07075) phrA 1334715..1334849 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  GTW28_RS07080 (GTW28_07080) yjpA 1334879..1335121 (-) 243 WP_046380953.1 YciI family protein -
  GTW28_RS07085 (GTW28_07085) xlyB 1335249..1336202 (+) 954 WP_046380954.1 N-acetylmuramoyl-L-alanine amidase -
  GTW28_RS07090 (GTW28_07090) yjqA 1336242..1336619 (-) 378 WP_014476529.1 PH domain-containing protein -
  GTW28_RS07095 (GTW28_07095) pghB 1336724..1337326 (+) 603 WP_015252289.1 poly-gamma-glutamate hydrolase family protein -
  GTW28_RS07100 (GTW28_07100) xpdC 1337403..1338239 (+) 837 WP_046380955.1 manganese catalase family protein -
  GTW28_RS07105 (GTW28_07105) xkdA 1338275..1338871 (-) 597 WP_019712456.1 ImmA/IrrE family metallo-endopeptidase -
  GTW28_RS07110 (GTW28_07110) xre 1339034..1339375 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=359870 GTW28_RS07070 WP_015252291.1 1333589..1334725(+) (rapC) [Bacillus subtilis strain BJQ0005]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=359870 GTW28_RS07070 WP_015252291.1 1333589..1334725(+) (rapC) [Bacillus subtilis strain BJQ0005]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCACCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTGTTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAACTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCAGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAGGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418