Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   GTW28_RS04595 Genome accession   NZ_CP047485
Coordinates   870358..871074 (+) Length   238 a.a.
NCBI ID   WP_046380854.1    Uniprot ID   -
Organism   Bacillus subtilis strain BJQ0005     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 865358..876074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTW28_RS04570 (GTW28_04570) - 866265..866537 (-) 273 Protein_858 spore gernimation protein -
  GTW28_RS04580 (GTW28_04580) - 866802..866978 (-) 177 Protein_859 spore germination protein -
  GTW28_RS04585 (GTW28_04585) treP 867167..868579 (+) 1413 WP_003233682.1 PTS system trehalose-specific EIIBC component -
  GTW28_RS04590 (GTW28_04590) treC 868649..870337 (+) 1689 WP_046380853.1 alpha,alpha-phosphotrehalase -
  GTW28_RS04595 (GTW28_04595) treR 870358..871074 (+) 717 WP_046380854.1 trehalose operon repressor Regulator
  GTW28_RS04600 (GTW28_04600) hypO 871214..871879 (+) 666 WP_029726870.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27869.83 Da        Isoelectric Point: 7.1737

>NTDB_id=359845 GTW28_RS04595 WP_046380854.1 870358..871074(+) (treR) [Bacillus subtilis strain BJQ0005]
MKVNKFITIYKDIAQQIEGGRWKAEEILPSEHELTAQYGTSRETVRKALHMLAQNGYIQKIRGKGSVVLNREKMQFPVSG
LVSFKELAQTLGKETKTTVHKFGLEPPSELIQKQLRANLDDDIWEVIRSRKIDGEHVILDKDYFFRKHVPHLTKEICENS
IYEYIEGELGLSISYAQKEIVAEPCTDEDRELLDLRGYDHMVVVRNYVFLEDTSLFQYTESRHRLDKFRFVDFARRGR

Nucleotide


Download         Length: 717 bp        

>NTDB_id=359845 GTW28_RS04595 WP_046380854.1 870358..871074(+) (treR) [Bacillus subtilis strain BJQ0005]
ATGAAGGTGAATAAATTCATCACAATTTATAAAGACATCGCACAGCAAATTGAAGGCGGCCGATGGAAAGCGGAGGAGAT
TCTTCCGTCTGAACATGAGTTGACCGCACAGTACGGTACATCAAGAGAAACGGTCCGAAAGGCGCTTCATATGCTCGCGC
AAAACGGTTATATTCAGAAAATCAGGGGAAAAGGCTCCGTCGTGCTCAATCGTGAAAAAATGCAGTTTCCCGTTTCGGGC
CTTGTCAGCTTCAAGGAGCTCGCGCAAACGCTTGGCAAAGAAACGAAAACAACTGTACACAAATTCGGGCTGGAGCCTCC
GTCAGAGCTGATCCAAAAACAGCTCCGGGCCAATCTGGATGACGACATCTGGGAAGTCATCAGGTCTAGAAAGATTGACG
GGGAACATGTGATTTTGGACAAGGATTACTTTTTCAGAAAGCATGTCCCTCACCTGACGAAAGAAATTTGTGAAAACTCC
ATATATGAATATATAGAAGGAGAGCTAGGTCTTTCGATCAGTTACGCCCAAAAAGAAATTGTCGCCGAGCCGTGTACGGA
CGAGGACAGAGAGCTGCTCGATTTACGCGGCTATGACCATATGGTCGTGGTGAGAAACTACGTCTTTTTGGAGGATACCA
GTTTGTTTCAATATACGGAAAGCAGACACCGTCTCGACAAATTCCGATTTGTTGATTTTGCGCGGCGGGGGAGATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(8-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.373

99.16

0.42