Detailed information NTG0359843

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: GTW28_RS04080
• Genome accession: NZ_CP047485
• Coordinates: 767066..768193 (-)
• Length: 375 a.a.
• NCBI ID: WP_052728183.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain BJQ0005
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 762066..773193

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GTW28_RS04060 (GTW28_04060)	-	764028..764630 (+)	603	WP_046380830.1	hypothetical protein	-
GTW28_RS04065 (GTW28_04065)	-	764630..766501 (+)	1872	WP_046380831.1	hypothetical protein	-
GTW28_RS21520 (GTW28_04070)	-	766602..766760 (-)	159	WP_121509446.1	YgjP-like metallopeptidase domain-containing protein	-
GTW28_RS04075 (GTW28_04075)	-	766879..767076 (-)	198	WP_003240078.1	hypothetical protein	-
GTW28_RS04080 (GTW28_04080)	rapC	767066..768193 (-)	1128	WP_052728183.1	tetratricopeptide repeat protein	Regulator
GTW28_RS04085 (GTW28_04085)	-	768382..768618 (-)	237	Protein_760	hypothetical protein	-
GTW28_RS04090 (GTW28_04090)	-	768768..769160 (-)	393	WP_046380833.1	hypothetical protein	-
GTW28_RS04095 (GTW28_04095)	-	769493..769963 (-)	471	WP_046380834.1	antitoxin YezG family protein	-
GTW28_RS04100 (GTW28_04100)	yeeF	769968..771974 (-)	2007	WP_046380835.1	LXG family T7SS effector deoxyribonuclease toxin YeeF	-
GTW28_RS04105 (GTW28_04105)	-	772141..772479 (+)	339	WP_021481280.1	hypothetical protein	-

Sequence

Protein

• Length: 375 a.a.
• Molecular weight: 44492.19 Da
• Isoelectric Point: 6.6870

>NTDB_id=359843 GTW28_RS04080 WP_052728183.1 767066..768193(-) (rapC) [Bacillus subtilis strain BJQ0005]
MGTISSPHVGMKINEWNRHIQKFNVTDAEMLKAEIERDIDIMEEDQDLLIYYQLIAFRHQLMIDYVIPTEGNQMELSEYL
KRIEGSNRKMEKLVEYYYYFFQGMYEFKEGNFLSAITFYQKAENTIPYISDEIERAEFYFKMAEVFYHMKQTHVSMHYSS
QAYNIYKTHDLYSVRRIQCHFVIAGNYDDLESHEKALPHLEQALKGARLLESKNKRIYGQALFNIGNCYLKMGELTKAAK
YMEKSIFQFKKSNFNNLTQAYHDLALIYFLQHKQEQAMDCFRKGVRFACKFDDDLFKIMFEGLQTLFIKKGEASILLNVF
NKLETSQGYPYMEELALLAAKFYTEIGQMDDSVICFKKMVHARKQIQRGDCLYEI

Nucleotide

• Length: 1128 bp

>NTDB_id=359843 GTW28_RS04080 WP_052728183.1 767066..768193(-) (rapC) [Bacillus subtilis strain BJQ0005]
TTGGGCACGATTTCGTCTCCGCACGTTGGGATGAAAATTAATGAGTGGAACCGGCATATTCAAAAGTTTAATGTGACTGA
CGCTGAAATGCTTAAAGCTGAGATCGAACGGGACATTGACATCATGGAAGAAGACCAAGACCTCTTGATTTACTATCAGC
TCATTGCATTTCGCCATCAGCTTATGATTGACTATGTGATTCCTACTGAAGGAAACCAAATGGAGTTATCAGAATATTTA
AAGAGAATTGAAGGCAGCAACAGGAAGATGGAGAAGCTCGTTGAATACTACTATTACTTTTTTCAAGGAATGTATGAATT
CAAAGAGGGCAATTTCTTAAGTGCCATTACATTCTATCAAAAAGCGGAAAACACAATTCCCTATATTTCAGATGAAATTG
AGCGGGCGGAATTTTATTTTAAAATGGCTGAAGTGTTTTATCATATGAAACAAACCCACGTATCCATGCACTATTCTTCT
CAGGCGTATAACATCTATAAAACGCACGACCTTTACTCAGTCCGCCGCATACAATGCCATTTTGTAATAGCAGGTAATTA
CGACGATTTAGAAAGTCATGAAAAGGCGCTCCCTCACCTCGAACAGGCACTAAAAGGCGCACGGCTGCTTGAAAGCAAAA
ACAAGCGGATTTACGGCCAAGCTTTATTCAATATCGGAAATTGTTATCTTAAAATGGGAGAATTGACGAAAGCAGCAAAA
TACATGGAGAAATCGATATTCCAATTTAAAAAATCAAATTTCAACAACTTGACACAAGCTTACCACGATTTAGCCTTAAT
TTATTTTCTTCAACATAAACAAGAACAGGCAATGGATTGTTTCAGAAAAGGCGTACGCTTCGCATGTAAATTCGATGATG
ACCTATTTAAAATTATGTTTGAAGGATTGCAGACGCTGTTTATCAAAAAAGGAGAAGCGTCCATTTTATTAAATGTTTTC
AACAAATTAGAGACATCCCAAGGATATCCTTATATGGAAGAGTTGGCATTATTAGCCGCAAAGTTTTATACTGAAATTGG
GCAGATGGATGATTCTGTTATCTGTTTCAAAAAGATGGTTCATGCCCGCAAACAAATTCAGAGAGGGGATTGTTTGTATG
AAATTTAA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_8) (259-286)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (3-64)

• Tetratricopeptide repeat (TPR_12) (187-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	41.689	100	0.421
rapF	Bacillus subtilis subsp. subtilis str. 168	38.786	100	0.392