Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   GTW28_RS00330 Genome accession   NZ_CP047485
Coordinates   58307..58537 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain BJQ0005     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 53307..63537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTW28_RS00300 (GTW28_00300) ridA 53471..53848 (+) 378 WP_046380721.1 2-iminobutanoate/2-iminopropanoate deaminase -
  GTW28_RS00305 (GTW28_00305) spoVG 54043..54336 (+) 294 WP_003218346.1 septation regulator SpoVG -
  GTW28_RS00310 (GTW28_00310) glmU 54529..55899 (+) 1371 WP_046380722.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  GTW28_RS00315 (GTW28_00315) prsS 55922..56875 (+) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  GTW28_RS00320 (GTW28_00320) rplYB 56960..57574 (+) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  GTW28_RS00325 (GTW28_00325) pth 57681..58247 (+) 567 WP_046380723.1 aminoacyl-tRNA hydrolase -
  GTW28_RS00330 (GTW28_00330) subA/fin 58307..58537 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  GTW28_RS00335 (GTW28_00335) mfd 58607..62140 (+) 3534 WP_046380724.1 transcription-repair coupling factor -
  GTW28_RS00340 (GTW28_00340) spoVT 62276..62812 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=359818 GTW28_RS00330 WP_003243417.1 58307..58537(+) (subA/fin) [Bacillus subtilis strain BJQ0005]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=359818 GTW28_RS00330 WP_003243417.1 58307..58537(+) (subA/fin) [Bacillus subtilis strain BJQ0005]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1