Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GTK51_RS16780 Genome accession   NZ_CP047469
Coordinates   3433528..3434133 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain DY612     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3428528..3439133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTK51_RS16760 (GTK51_16555) aes 3428565..3429524 (+) 960 WP_063501955.1 acetyl esterase -
  GTK51_RS16765 (GTK51_16560) hemH 3429521..3430483 (-) 963 WP_001250088.1 ferrochelatase -
  GTK51_RS16770 (GTK51_16565) adk 3430719..3431363 (-) 645 WP_001220233.1 adenylate kinase -
  GTK51_RS16775 (GTK51_16570) htpG 3431544..3433418 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  GTK51_RS16780 (GTK51_16575) recR 3433528..3434133 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  GTK51_RS16785 (GTK51_16580) ybaB 3434133..3434462 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  GTK51_RS16790 (GTK51_16585) dnaX 3434515..3436446 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  GTK51_RS16795 (GTK51_16590) apt 3436575..3437126 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  GTK51_RS16800 (GTK51_16595) ybaN 3437279..3437656 (-) 378 WP_001188905.1 DUF454 family protein -
  GTK51_RS16805 (GTK51_16600) priC 3437726..3438253 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  GTK51_RS16810 (GTK51_16605) rsmS 3438267..3438428 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=359788 GTK51_RS16780 WP_001195025.1 3433528..3434133(-) (recR) [Escherichia coli strain DY612]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=359788 GTK51_RS16780 WP_001195025.1 3433528..3434133(-) (recR) [Escherichia coli strain DY612]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCACAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443