Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   GTK51_RS08435 Genome accession   NZ_CP047469
Coordinates   1765849..1767276 (-) Length   475 a.a.
NCBI ID   WP_001618667.1    Uniprot ID   -
Organism   Escherichia coli strain DY612     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1760849..1772276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTK51_RS08405 (GTK51_08325) yeeZ 1760904..1761728 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  GTK51_RS08410 (GTK51_08330) yeeY 1761774..1762703 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  GTK51_RS08415 (GTK51_08335) yoeI 1762918..1762980 (+) 63 WP_010723108.1 membrane protein YoeI -
  GTK51_RS08420 (GTK51_08340) plaP 1762970..1764328 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  GTK51_RS08425 (GTK51_08345) tsuA 1764507..1765565 (+) 1059 WP_024193414.1 thiosulfate utilization transporter TsuA/YeeE -
  GTK51_RS08430 (GTK51_08350) tsuB 1765579..1765806 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  GTK51_RS08435 (GTK51_08355) sbcB 1765849..1767276 (-) 1428 WP_001618667.1 exodeoxyribonuclease I Machinery gene
  GTK51_RS08440 (GTK51_08360) dacD 1767485..1768651 (+) 1167 WP_000830155.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  GTK51_RS08445 (GTK51_08365) sbmC 1768770..1769243 (+) 474 WP_001105412.1 DNA gyrase inhibitor SbmC -
  GTK51_RS08450 (GTK51_08370) yeeA 1769441..1770499 (+) 1059 WP_001200890.1 FUSC family protein -
  GTK51_RS08455 (GTK51_08375) tmaR 1770671..1771000 (+) 330 WP_000450409.1 DUF496 family protein -
  GTK51_RS23770 (GTK51_08380) - 1771101..1771283 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  GTK51_RS08465 - 1771403..1771483 (+) 81 WP_023441679.1 hypothetical protein -
  GTK51_RS08470 - 1771772..1771852 (-) 81 Protein_1653 hypothetical protein -
  GTK51_RS08475 (GTK51_08390) yeeW 1771898..1772092 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54514.84 Da        Isoelectric Point: 5.4700

>NTDB_id=359768 GTK51_RS08435 WP_001618667.1 1765849..1767276(-) (sbcB) [Escherichia coli strain DY612]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPTDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=359768 GTK51_RS08435 WP_001618667.1 1765849..1767276(-) (sbcB) [Escherichia coli strain DY612]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCTGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTACAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACGCCAGAGTTTTTGCAAGGTTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

98.947

0.585