Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GTK51_RS05260 Genome accession   NZ_CP047469
Coordinates   1076635..1077150 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain DY612     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1071635..1082150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTK51_RS05215 (GTK51_05150) csrA 1072222..1072407 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  GTK51_RS05245 (GTK51_05180) yqaB 1073865..1074431 (+) 567 WP_000273289.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  GTK51_RS05250 (GTK51_05185) yqaA 1074428..1074856 (+) 429 WP_001287454.1 YqaA family protein -
  GTK51_RS05255 (GTK51_05190) gshA 1074929..1076485 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  GTK51_RS05260 (GTK51_05195) luxS 1076635..1077150 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  GTK51_RS05265 (GTK51_05200) emrB 1077214..1078752 (-) 1539 WP_042962729.1 multidrug efflux MFS transporter permease subunit EmrB -
  GTK51_RS05270 (GTK51_05205) emrA 1078769..1079941 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  GTK51_RS05275 (GTK51_05210) emrR 1080068..1080598 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  GTK51_RS05280 (GTK51_05215) ygaH 1080689..1081024 (-) 336 WP_000119766.1 L-valine transporter subunit YgaH -
  GTK51_RS05285 (GTK51_05220) ygaZ 1081014..1081751 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=359758 GTK51_RS05260 WP_001130211.1 1076635..1077150(+) (luxS) [Escherichia coli strain DY612]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=359758 GTK51_RS05260 WP_001130211.1 1076635..1077150(+) (luxS) [Escherichia coli strain DY612]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731