Detailed information NTG0359755

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GTK51_RS04985
• Genome accession: NZ_CP047469
• Coordinates: 1023816..1024808 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain DY612
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1018816..1029808

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GTK51_RS04955 (GTK51_04885)	ispD	1018877..1019587 (+)	711	WP_000246135.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GTK51_RS04960 (GTK51_04890)	ispF	1019587..1020066 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GTK51_RS04965 (GTK51_04895)	truD	1020063..1021112 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
GTK51_RS04970 (GTK51_04900)	surE	1021093..1021854 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
GTK51_RS04975 (GTK51_04905)	pcm	1021848..1022474 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
GTK51_RS04980 (GTK51_04910)	nlpD	1022659..1023753 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
GTK51_RS04985 (GTK51_04915)	rpoS	1023816..1024808 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
GTK51_RS04990 (GTK51_04920)	ygbN	1024902..1026266 (-)	1365	WP_000104441.1	GntP family transporter	-
GTK51_RS04995 (GTK51_04925)	ygbM	1026355..1027131 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
GTK51_RS05000 (GTK51_04930)	ygbL	1027136..1027774 (-)	639	WP_001278994.1	aldolase	-
GTK51_RS05005 (GTK51_04935)	otnK	1027771..1029033 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=359755 GTK51_RS04985 WP_000081550.1 1023816..1024808(+) (rpoS) [Escherichia coli strain DY612]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=359755 GTK51_RS04985 WP_000081550.1 1023816..1024808(+) (rpoS) [Escherichia coli strain DY612]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715