Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   GTK64_RS05625 Genome accession   NZ_CP047461
Coordinates   1134049..1135476 (+) Length   475 a.a.
NCBI ID   WP_074400803.1    Uniprot ID   -
Organism   Escherichia coli strain ZF34     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1129049..1140476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTK64_RS05580 (GTK64_05565) cbtA 1129105..1129236 (+) 132 Protein_1102 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  GTK64_RS05585 (GTK64_05570) yeeW 1129233..1129427 (+) 195 WP_000988600.1 DUF5983 family protein -
  GTK64_RS05590 - 1129473..1129553 (+) 81 Protein_1104 hypothetical protein -
  GTK64_RS05595 (GTK64_05575) - 1129842..1129970 (-) 129 Protein_1105 transposase domain-containing protein -
  GTK64_RS05600 (GTK64_05580) - 1130042..1130224 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  GTK64_RS05605 (GTK64_05585) tmaR 1130325..1130654 (-) 330 WP_000450409.1 DUF496 family protein -
  GTK64_RS05610 (GTK64_05590) yeeA 1130826..1131884 (-) 1059 WP_064670363.1 FUSC family protein -
  GTK64_RS05615 (GTK64_05595) sbmC 1132082..1132555 (-) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  GTK64_RS05620 (GTK64_05600) dacD 1132674..1133840 (-) 1167 WP_016247321.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  GTK64_RS05625 (GTK64_05605) sbcB 1134049..1135476 (+) 1428 WP_074400803.1 exodeoxyribonuclease I Machinery gene
  GTK64_RS05630 (GTK64_05610) tsuB 1135519..1135746 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  GTK64_RS05635 (GTK64_05615) tsuA 1135760..1136818 (-) 1059 WP_064670362.1 thiosulfate utilization transporter TsuA/YeeE -
  GTK64_RS05640 (GTK64_05620) plaP 1136997..1138355 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  GTK64_RS05645 (GTK64_05625) yoeI 1138345..1138407 (-) 63 WP_010723108.1 membrane protein YoeI -
  GTK64_RS05650 (GTK64_05630) yeeY 1138622..1139551 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  GTK64_RS05655 (GTK64_05635) yeeZ 1139597..1140421 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54501.86 Da        Isoelectric Point: 5.6070

>NTDB_id=359665 GTK64_RS05625 WP_074400803.1 1134049..1135476(+) (sbcB) [Escherichia coli strain ZF34]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNLIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKMRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=359665 GTK64_RS05625 WP_074400803.1 1134049..1135476(+) (sbcB) [Escherichia coli strain ZF34]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATCTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCCGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAATGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment