Detailed information NTG0359596

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GTK48_RS09165
• Genome accession: NZ_CP047455
• Coordinates: 1887126..1888118 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain ZF31
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1882126..1893118

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GTK48_RS23480	otnK	1882901..1884163 (+)	1263	Protein_1799	3-oxo-tetronate kinase	-
GTK48_RS09150 (GTK48_09105)	ygbL	1884160..1884798 (+)	639	WP_001278994.1	aldolase	-
GTK48_RS09155 (GTK48_09110)	ygbM	1884803..1885579 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
GTK48_RS09160 (GTK48_09115)	ygbN	1885668..1887032 (+)	1365	WP_000104441.1	GntP family transporter	-
GTK48_RS09165 (GTK48_09120)	rpoS	1887126..1888118 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
GTK48_RS09170 (GTK48_09125)	nlpD	1888181..1889275 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
GTK48_RS09175 (GTK48_09130)	pcm	1889460..1890086 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
GTK48_RS09180 (GTK48_09135)	surE	1890080..1890841 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
GTK48_RS09185 (GTK48_09140)	truD	1890822..1891871 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
GTK48_RS09190 (GTK48_09145)	ispF	1891868..1892347 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GTK48_RS09195 (GTK48_09150)	ispD	1892347..1893057 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=359596 GTK48_RS09165 WP_000081550.1 1887126..1888118(-) (rpoS) [Escherichia coli strain ZF31]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=359596 GTK48_RS09165 WP_000081550.1 1887126..1888118(-) (rpoS) [Escherichia coli strain ZF31]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715