Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GTK48_RS08890 Genome accession   NZ_CP047455
Coordinates   1834923..1835438 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain ZF31     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1829923..1840438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTK48_RS08860 (GTK48_08815) ygaZ 1830322..1831059 (+) 738 WP_000445651.1 L-valine exporter subunit YgaZ -
  GTK48_RS08865 (GTK48_08820) ygaH 1831049..1831384 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  GTK48_RS08875 (GTK48_08825) emrR 1831475..1832005 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  GTK48_RS08880 (GTK48_08830) emrA 1832132..1833304 (+) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  GTK48_RS08885 (GTK48_08835) emrB 1833321..1834859 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  GTK48_RS08890 (GTK48_08840) luxS 1834923..1835438 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  GTK48_RS08895 (GTK48_08845) gshA 1835588..1837144 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  GTK48_RS08900 (GTK48_08850) yqaA 1837217..1837645 (-) 429 WP_001287454.1 YqaA family protein -
  GTK48_RS08905 (GTK48_08855) yqaB 1837642..1838208 (-) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  GTK48_RS08930 (GTK48_08880) csrA 1839527..1839712 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=359593 GTK48_RS08890 WP_001130211.1 1834923..1835438(-) (luxS) [Escherichia coli strain ZF31]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=359593 GTK48_RS08890 WP_001130211.1 1834923..1835438(-) (luxS) [Escherichia coli strain ZF31]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731