Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   MS6193_RS14565 Genome accession   NZ_CP047405
Coordinates   2989215..2989730 (-) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain MS6193     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2984215..2994730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MS6193_RS14540 (MS6193_02961) ygaZ 2984614..2985351 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  MS6193_RS14545 (MS6193_02962) ygaH 2985341..2985676 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  MS6193_RS14550 (MS6193_02963) emrR 2985767..2986297 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  MS6193_RS14555 (MS6193_02964) emrA 2986424..2987596 (+) 1173 WP_114205176.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  MS6193_RS14560 (MS6193_02965) emrB 2987613..2989151 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  MS6193_RS14565 (MS6193_02966) luxS 2989215..2989730 (-) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  MS6193_RS14570 (MS6193_02968) gshA 2989880..2991436 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  MS6193_RS14575 (MS6193_02969) yqaA 2991509..2991937 (-) 429 WP_001287457.1 YqaA family protein -
  MS6193_RS14580 (MS6193_02970) yqaB 2991934..2992500 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  MS6193_RS14610 (MS6193_02977) csrA 2994093..2994278 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=359528 MS6193_RS14565 WP_001130207.1 2989215..2989730(-) (luxS) [Escherichia coli strain MS6193]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=359528 MS6193_RS14565 WP_001130207.1 2989215..2989730(-) (luxS) [Escherichia coli strain MS6193]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment