Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ROD_RS05210 Genome accession   NC_013716
Coordinates   1132472..1133101 (+) Length   209 a.a.
NCBI ID   WP_012905344.1    Uniprot ID   D2TS89
Organism   Citrobacter rodentium ICC168     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1127472..1138101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ROD_RS05190 (ROD_10161) - 1127853..1129613 (-) 1761 WP_012905340.1 AAA family ATPase -
  ROD_RS05195 (ROD_10181) matP 1129799..1130251 (+) 453 WP_024132582.1 macrodomain Ter protein MatP -
  ROD_RS05200 (ROD_10191) ompA 1130334..1131389 (-) 1056 WP_012905342.1 porin OmpA -
  ROD_RS05205 (ROD_10201) sulA 1131745..1132254 (-) 510 WP_024132584.1 SOS-induced cell division inhibitor SulA -
  ROD_RS05210 (ROD_10211) sxy/tfoX 1132472..1133101 (+) 630 WP_012905344.1 TfoX/Sxy family DNA transformation protein Regulator
  ROD_RS05215 (ROD_10221) yccS 1133055..1135217 (-) 2163 WP_012905345.1 YccS family putative transporter -
  ROD_RS05220 (ROD_10231) - 1135235..1135681 (-) 447 WP_024132585.1 YccF domain-containing protein -
  ROD_RS05225 (ROD_10241) helD 1135804..1137858 (+) 2055 WP_012905347.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24413.38 Da        Isoelectric Point: 9.5366

>NTDB_id=35951 ROD_RS05210 WP_012905344.1 1132472..1133101(+) (sxy/tfoX) [Citrobacter rodentium ICC168]
MKVHSYDRIYKSQEYLSSLGNIQYRSLFGSYSLTIQDTVFAMVADGELYLRACEQSVQYCVKHSPVWLTFMKRGRPVMLN
YYQVDESLWRDQQQLIRLSKFSLDAALQEKLRRGAQRRLKDLPNMTFHLESLLNEVGINDVSTLRILGAKMCWLRLKQLN
KSITDKILYILEGAIYGVHEAALPATRRRELAEWVKSLAQEPMYPLKIE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=35951 ROD_RS05210 WP_012905344.1 1132472..1133101(+) (sxy/tfoX) [Citrobacter rodentium ICC168]
ATGAAAGTTCACTCCTATGACAGGATCTATAAATCGCAAGAATACTTATCTTCGCTGGGTAATATTCAGTACCGTTCGCT
GTTCGGCAGTTACAGTCTGACTATCCAGGATACCGTCTTTGCAATGGTTGCTGACGGCGAGCTTTATCTGCGCGCCTGCG
AGCAGAGCGTACAGTATTGTGTGAAACACTCCCCTGTCTGGCTGACCTTTATGAAACGCGGGCGTCCCGTTATGCTCAAT
TACTATCAGGTGGATGAAAGTCTCTGGCGCGATCAGCAACAGCTGATCCGTTTATCGAAATTTTCCCTTGATGCGGCATT
GCAAGAGAAACTCAGGCGCGGCGCTCAGCGTCGGTTAAAGGATCTGCCCAATATGACCTTTCATCTGGAGAGTTTACTTA
ATGAGGTGGGGATTAATGACGTCAGCACGTTACGCATCCTGGGGGCAAAAATGTGCTGGCTGCGTCTGAAGCAGCTCAAT
AAATCGATAACCGACAAAATTCTTTATATTCTCGAAGGGGCGATTTATGGCGTTCATGAAGCGGCGCTCCCGGCGACGCG
CCGCCGGGAGCTTGCTGAGTGGGTTAAATCGCTGGCGCAGGAGCCGATGTATCCGCTGAAGATTGAGTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D2TS89

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

70.813

100

0.708

Multiple sequence alignment