Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcC   Type   Machinery gene
Locus tag   I33_RS05625 Genome accession   NC_017195
Coordinates   1123457..1126849 (+) Length   1130 a.a.
NCBI ID   WP_014476377.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis str. RO-NN-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1118457..1131849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I33_RS05615 (I33_1198) addA 1118515..1122213 (+) 3699 WP_014476375.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  I33_RS05620 (I33_1199) sbcD 1122285..1123460 (+) 1176 WP_014476376.1 exonuclease subunit SbcD -
  I33_RS05625 (I33_1200) sbcC 1123457..1126849 (+) 3393 WP_014476377.1 exonuclease subunit SbcC Machinery gene
  I33_RS05630 (I33_1201) hlpB 1126863..1127165 (+) 303 WP_014476378.1 HNH nuclease-like protein HlpB -
  I33_RS05635 (I33_1202) gerPF 1127202..1127420 (-) 219 WP_003233096.1 spore germination protein -
  I33_RS05640 (I33_1203) gerPE 1127452..1127853 (-) 402 WP_032725362.1 spore germination protein GerPE -
  I33_RS05645 (I33_1204) gerPD 1127853..1128029 (-) 177 WP_014476380.1 spore germination protein GerPD -
  I33_RS05650 (I33_1205) gerPC 1128026..1128643 (-) 618 WP_014476381.1 spore germination protein GerPC -
  I33_RS05655 (I33_1206) gerPB 1128666..1128899 (-) 234 WP_003233090.1 spore germination protein GerPB -
  I33_RS05660 (I33_1207) gerPA 1128914..1129135 (-) 222 WP_003233088.1 spore germination protein -
  I33_RS05665 (I33_1209) yisI 1129559..1129729 (-) 171 WP_014476383.1 aspartyl-phosphate phosphatase YisI -
  I33_RS05670 (I33_1210) yisJ 1129875..1130798 (-) 924 WP_014476384.1 CotH kinase family protein -

Sequence

Protein


Download         Length: 1130 a.a.        Molecular weight: 128834.44 Da        Isoelectric Point: 5.5143

>NTDB_id=35950 I33_RS05625 WP_014476377.1 1123457..1126849(+) (sbcC) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
MKPIALSIKGLHSFREEQTIDFEGLSGAGVFGIFGPTGSGKSSILDAMTLALYGKVERAANNTHGILNQAEDTLSVSFTF
ALQTNHQIAYKVERVFKRTDEMKVKTALCRFIEIKDEHTVLADKASEVNKRVEELLGLTIDDFTRAVVLPQGKFAEFLSL
KGAERRHMLQRLFNLEQYGDRLVKKLRRQAQEANARKNEMLAEQSGLGEASSEAVEQAEKALEQAEARLEAMRKNRDQAK
ERFTEHQEIWNVQKEKSAYEEEKKRLAEEQPHIDSMQKRLLEAETATALKPYADRYAEAIQHEEQAEKEQTLAQKDLADR
TAFFQRKHEEYEAWRQHKSEKEPELLTKQEQLSRLQEVEIKLSEAKQEEARKKTELQQKEEALQSVMNELETVTDRLTRG
QNRQTELKQQLKSLQVTSNERKSCHQAAEMALRIRQTEEQIKKEKKRSEELNLVLQKMNEEKNTLVQKTEAEENNIIQAY
EAVQTVYHLVCETERSLTRMTEEARKSQHTLHLQREKARVALLTKELAQKLTAGKPCPVCGSTDHDPSASVHETYEADSH
LEEDIKRTDVLLTEAAVLSQEILSAKITLEEQSARFIEQCPFLQTIQAQNLEAAASFEHHPVYEAFETAKFEWKRIKQDI
LSVKTRMAQMIGAYQESLKKAEQLNEKIGFEKREADRIESIISELQSSMDSSLNMFKEAFQNQSVDEAEKWQQAIEEKDR
AAEECEKRIEKSIAFLAEHEAQKEKLRESGHRLEREKLELHYAAERIKSVIADYEHELGDYAKGDSIQIKLHSVQQDLKL
LKEKEQSLYEELQSAQMKLNQAKSRASASELTLQEAKGRLEKAKAAWLEHTKNTSITRTEEVEQSLIPADELEKMKTGID
QFMDKLKQNAANLKRVAEILAGRALSESEWNETVAALQEAEDAFGAAIEEKGAAAKALAVIRDHHKRFNEIEAELKKWQT
HIDRLDKLQAVFKGNTFVEFLAEEQLESVARDASARLSMLTRQRYAIEVDSEGGFVMRDDANGGVRRPVSSLSGGETFLT
SLSLALALSAQIQLRGEYPLQFFFLDEGFGTLDQDLLDTVVTALEKLQSDNLAVGVISHVQELRARLPKKLIVHPAEPSG
RGTRVSLELM

Nucleotide


Download         Length: 3393 bp        

>NTDB_id=35950 I33_RS05625 WP_014476377.1 1123457..1126849(+) (sbcC) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
ATGAAGCCGATCGCCTTAAGCATTAAGGGGCTCCACAGCTTTAGAGAGGAGCAGACGATAGATTTTGAAGGCCTTTCCGG
TGCCGGTGTTTTCGGCATTTTCGGCCCGACAGGAAGCGGTAAATCCTCTATTCTCGACGCAATGACGCTTGCTTTATACG
GAAAGGTGGAACGGGCGGCGAATAATACGCACGGGATCTTAAACCAGGCGGAAGATACGCTGTCTGTTTCCTTTACCTTT
GCGCTTCAGACGAATCATCAAATCGCCTACAAAGTCGAGCGTGTGTTTAAGAGAACGGATGAGATGAAGGTAAAAACGGC
ACTTTGCCGCTTCATCGAAATCAAGGATGAGCATACAGTGCTGGCTGATAAAGCCAGCGAAGTGAATAAAAGAGTCGAGG
AGCTCTTGGGTCTGACGATCGACGATTTTACGAGAGCGGTGGTGCTGCCCCAAGGAAAATTTGCTGAATTTCTGTCTTTA
AAAGGGGCAGAGCGCAGGCATATGCTTCAGCGTTTATTTAATTTGGAGCAATATGGAGACAGGCTTGTGAAAAAGCTGAG
ACGGCAGGCGCAGGAAGCCAATGCCAGAAAAAATGAAATGCTTGCTGAACAATCCGGTCTCGGTGAGGCGAGCTCAGAGG
CAGTTGAGCAGGCTGAAAAGGCTCTTGAACAAGCTGAAGCCCGGCTGGAAGCGATGAGGAAGAACCGTGATCAGGCGAAG
GAGCGGTTTACAGAGCATCAGGAGATTTGGAATGTCCAAAAGGAAAAATCCGCTTATGAAGAAGAGAAAAAACGTCTCGC
AGAAGAACAGCCGCATATAGACAGCATGCAAAAACGCCTGCTGGAAGCAGAAACAGCAACAGCCCTTAAGCCCTATGCGG
ACCGATACGCAGAAGCGATCCAGCATGAGGAGCAAGCTGAAAAGGAACAAACGCTAGCCCAAAAAGATTTAGCAGACCGG
ACTGCTTTCTTTCAGCGAAAACATGAAGAGTATGAAGCATGGCGCCAGCATAAAAGCGAGAAAGAGCCTGAGCTTTTAAC
CAAACAGGAACAGCTTTCCCGCTTGCAGGAGGTCGAAATCAAACTGAGTGAGGCCAAGCAAGAGGAGGCTCGCAAAAAGA
CTGAACTCCAGCAGAAAGAAGAGGCCCTTCAATCTGTCATGAATGAATTGGAGACGGTAACAGACCGCCTGACACGAGGG
CAAAACAGACAGACGGAATTGAAACAGCAGCTCAAATCCCTGCAGGTGACATCCAATGAGCGAAAAAGCTGCCATCAGGC
CGCAGAAATGGCATTGCGCATCAGACAAACCGAGGAGCAAATCAAAAAAGAGAAAAAACGAAGTGAAGAATTGAACCTCG
TGCTGCAGAAGATGAATGAAGAGAAGAATACACTCGTTCAAAAGACGGAAGCGGAAGAAAACAACATCATTCAGGCATAT
GAGGCAGTTCAAACTGTGTATCATTTGGTGTGCGAAACGGAACGCTCATTAACACGTATGACGGAAGAGGCTAGAAAGAG
TCAACACACGCTTCACTTACAGCGTGAAAAAGCAAGGGTGGCACTGCTGACAAAAGAGTTAGCCCAAAAGCTGACTGCCG
GAAAGCCTTGCCCGGTATGCGGTTCAACCGATCATGATCCATCTGCCTCAGTACATGAAACGTATGAAGCCGACAGCCAT
CTTGAAGAGGACATCAAACGGACAGATGTGTTATTGACGGAAGCTGCAGTTCTCAGCCAGGAGATTCTTTCAGCCAAAAT
TACGCTTGAAGAACAGTCCGCGCGCTTTATTGAACAGTGTCCGTTTTTGCAGACAATTCAAGCACAGAACCTTGAAGCGG
CAGCTTCCTTTGAACATCATCCGGTGTATGAAGCATTTGAAACTGCCAAATTTGAATGGAAACGAATCAAGCAGGACATT
CTTTCTGTTAAGACACGAATGGCACAAATGATCGGCGCCTATCAGGAATCTTTAAAAAAGGCCGAGCAGCTTAATGAAAA
AATCGGTTTTGAAAAAAGAGAAGCTGACCGTATTGAAAGCATCATCAGCGAGCTTCAATCCTCAATGGACAGCAGTCTGA
ACATGTTTAAAGAAGCATTTCAGAATCAATCTGTGGACGAAGCAGAAAAATGGCAGCAAGCCATTGAAGAAAAGGACCGG
GCTGCAGAAGAATGTGAAAAACGAATTGAGAAGAGTATCGCGTTTCTTGCTGAGCATGAAGCACAAAAGGAAAAACTGCG
GGAATCTGGACACCGGCTTGAACGGGAAAAGCTGGAGCTTCATTATGCGGCTGAACGAATCAAGAGCGTGATAGCTGATT
ATGAGCACGAACTCGGAGATTATGCAAAAGGAGATTCGATTCAAATCAAACTCCACTCTGTCCAGCAGGATCTAAAGCTG
TTAAAGGAAAAAGAACAATCTTTATATGAAGAACTGCAAAGCGCCCAAATGAAGCTCAACCAGGCGAAAAGCCGCGCTTC
GGCAAGCGAGCTCACTCTTCAAGAGGCGAAGGGCAGATTGGAAAAAGCAAAAGCTGCTTGGCTTGAGCATACAAAAAACA
CCTCCATTACCCGGACTGAGGAGGTTGAACAAAGTCTCATCCCAGCCGATGAACTTGAAAAGATGAAAACCGGCATAGAC
CAGTTTATGGATAAACTGAAGCAAAATGCTGCAAACTTAAAACGAGTAGCAGAGATACTTGCCGGCAGAGCATTATCAGA
GAGCGAATGGAACGAAACCGTTGCAGCATTACAAGAAGCTGAGGACGCATTTGGCGCTGCTATAGAGGAAAAAGGCGCGG
CCGCAAAAGCACTGGCTGTCATTCGCGACCATCATAAACGGTTTAATGAAATTGAAGCTGAACTGAAAAAATGGCAGACG
CATATCGACAGGCTGGACAAGCTGCAAGCTGTGTTTAAAGGCAATACCTTCGTCGAATTTTTAGCTGAGGAGCAGCTTGA
AAGCGTTGCGAGGGACGCCTCAGCAAGACTCAGTATGCTGACAAGACAGCGCTATGCCATCGAAGTAGATTCAGAAGGCG
GCTTCGTGATGCGGGATGACGCGAATGGAGGCGTACGACGCCCGGTTTCCAGTTTGTCTGGAGGAGAGACCTTCCTCACC
TCGCTTTCACTTGCTCTTGCGCTGTCTGCGCAGATTCAGCTTCGGGGGGAATACCCGCTGCAGTTCTTTTTCTTAGATGA
AGGCTTCGGCACACTGGATCAAGATCTGCTTGATACGGTTGTAACGGCTTTAGAAAAACTTCAGTCAGACAATCTGGCTG
TCGGTGTCATCAGCCATGTGCAGGAACTGCGTGCACGGCTTCCGAAAAAGCTGATCGTCCATCCGGCTGAACCGAGCGGC
CGCGGTACGCGGGTATCACTTGAGTTGATGTAA

Domains

Predicted by InterProScan.

SbcC/RAD50-like, Walker B motif (SbcC_Walker_B)

(1002-1085)

AAA domain (AAA_23)

(6-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcC Bacillus subtilis subsp. subtilis str. 168

98.23

100

0.982

Multiple sequence alignment