Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   MS6193_RS02855 Genome accession   NZ_CP047405
Coordinates   596607..597212 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain MS6193     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 591607..602212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MS6193_RS02825 (MS6193_00572) rsmS 592312..592473 (-) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -
  MS6193_RS02830 (MS6193_00573) priC 592487..593014 (-) 528 WP_000844848.1 primosomal replication protein N'' -
  MS6193_RS02835 (MS6193_00574) ybaN 593084..593461 (+) 378 WP_001188901.1 DUF454 family protein -
  MS6193_RS02840 (MS6193_00575) apt 593614..594165 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  MS6193_RS02845 (MS6193_00576) dnaX 594294..596225 (+) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  MS6193_RS02850 (MS6193_00578) ybaB 596278..596607 (+) 330 WP_142457809.1 YbaB/EbfC family nucleoid-associated protein -
  MS6193_RS02855 (MS6193_00579) recR 596607..597212 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  MS6193_RS02860 (MS6193_00580) htpG 597322..599196 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  MS6193_RS02865 (MS6193_00581) adk 599377..600021 (+) 645 WP_001347617.1 adenylate kinase -
  MS6193_RS02870 (MS6193_00582) hemH 600257..601219 (+) 963 WP_001250088.1 ferrochelatase -
  MS6193_RS02875 (MS6193_00583) aes 601216..602175 (-) 960 WP_000801846.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=359499 MS6193_RS02855 WP_001195025.1 596607..597212(+) (recR) [Escherichia coli strain MS6193]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=359499 MS6193_RS02855 WP_001195025.1 596607..597212(+) (recR) [Escherichia coli strain MS6193]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCTGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACTCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment