Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilP   Type   Machinery gene
Locus tag   EA719_RS01500 Genome accession   NZ_CP039518
Coordinates   315153..315680 (+) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain TG22653     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 310153..320680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EA719_RS01485 (EA719_001485) pilM 312706..313764 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  EA719_RS01490 (EA719_001490) pilN 313764..314405 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  EA719_RS01495 (EA719_001495) pilO 314402..315142 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  EA719_RS01500 (EA719_001500) pilP 315153..315680 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  EA719_RS01505 (EA719_001505) pilQ 315748..317913 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  EA719_RS01510 (EA719_001510) aroK 317925..318494 (+) 570 WP_000643712.1 shikimate kinase AroK -
  EA719_RS01515 (EA719_001515) aroB 318523..319605 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -
  EA719_RS01520 (EA719_001520) - 319621..320496 (+) 876 WP_000218802.1 hypothetical protein -

Sequence


Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=359463 EA719_RS01500 WP_000695065.1 315153..315680(+) (pilP) [Acinetobacter baumannii strain TG22653]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=359463 EA719_RS01500 WP_000695065.1 315153..315680(+) (pilP) [Acinetobacter baumannii strain TG22653]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GCATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCAGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACATTGGTCTTGATTGGGCCTGCACCCTAA

Domains


Predicted by InterproScan.

(27-170)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1

  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714


Multiple sequence alignment