Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GTP13_RS22450 Genome accession   NZ_CP047378
Coordinates   4357373..4357888 (-) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain CAU16175     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4352373..4362888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTP13_RS22420 ygaZ 4352772..4353509 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  GTP13_RS22425 ygaH 4353499..4353834 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  GTP13_RS22435 emrR 4353925..4354455 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  GTP13_RS22440 emrA 4354582..4355754 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  GTP13_RS22445 emrB 4355771..4357309 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  GTP13_RS22450 luxS 4357373..4357888 (-) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  GTP13_RS22455 gshA 4358038..4359594 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  GTP13_RS22460 yqaA 4359667..4360095 (-) 429 WP_001287457.1 YqaA family protein -
  GTP13_RS22465 yqaB 4360092..4360658 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  GTP13_RS22495 csrA 4362117..4362302 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=359458 GTP13_RS22450 WP_001130207.1 4357373..4357888(-) (luxS) [Escherichia coli strain CAU16175]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=359458 GTP13_RS22450 WP_001130207.1 4357373..4357888(-) (luxS) [Escherichia coli strain CAU16175]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731