Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   GTP13_RS17980 Genome accession   NZ_CP047378
Coordinates   3493479..3494906 (+) Length   475 a.a.
NCBI ID   WP_104772124.1    Uniprot ID   -
Organism   Escherichia coli strain CAU16175     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3488479..3499906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTP13_RS17940 yeeW 3488662..3488856 (+) 195 WP_000988600.1 DUF5983 family protein -
  GTP13_RS17945 - 3488902..3488982 (+) 81 Protein_3556 hypothetical protein -
  GTP13_RS31610 - 3489271..3489378 (-) 108 WP_074147515.1 transposase domain-containing protein -
  GTP13_RS31615 - 3489330..3489653 (+) 324 WP_250852008.1 EutP/PduV family microcompartment system protein -
  GTP13_RS17960 tmaR 3489754..3490083 (-) 330 WP_000450409.1 DUF496 family protein -
  GTP13_RS17965 yeeA 3490255..3491313 (-) 1059 WP_001200891.1 FUSC family protein -
  GTP13_RS17970 sbmC 3491512..3491985 (-) 474 WP_001105414.1 DNA gyrase inhibitor SbmC -
  GTP13_RS17975 dacD 3492104..3493270 (-) 1167 WP_167582801.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  GTP13_RS17980 sbcB 3493479..3494906 (+) 1428 WP_104772124.1 exodeoxyribonuclease I Machinery gene
  GTP13_RS17985 tsuB 3494949..3495176 (-) 228 WP_000985280.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  GTP13_RS17990 tsuA 3495190..3496248 (-) 1059 WP_000492315.1 thiosulfate utilization transporter TsuA/YeeE -
  GTP13_RS17995 plaP 3496427..3497785 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  GTP13_RS18000 yoeI 3497775..3497837 (-) 63 WP_010723108.1 membrane protein YoeI -
  GTP13_RS18005 yeeY 3498052..3498981 (-) 930 WP_104772125.1 LysR substrate-binding domain-containing protein -
  GTP13_RS18010 yeeZ 3499027..3499851 (-) 825 WP_000754749.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54514.84 Da        Isoelectric Point: 5.4740

>NTDB_id=359449 GTP13_RS17980 WP_104772124.1 3493479..3494906(+) (sbcB) [Escherichia coli strain CAU16175]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAIPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=359449 GTP13_RS17980 WP_104772124.1 3493479..3494906(+) (sbcB) [Escherichia coli strain CAU16175]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGAATATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCATTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGTTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.298

98.947

0.577