Detailed information NTG0359435

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: E8E00_RS04545
• Genome accession: NZ_CP039516
• Coordinates: 1018461..1021862 (-)
• Length: 1133 a.a.
• NCBI ID: WP_096629132.1
• Uniprot ID: A0A2A4GIE4
• Organism: Salinivibrio sp. YCSC6
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 1013461..1026862

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E8E00_RS04530 (E8E00_04530)	-	1013919..1014947 (-)	1029	WP_046075427.1	ABC transporter permease	-
E8E00_RS04535 (E8E00_04535)	-	1014949..1015935 (-)	987	WP_046075428.1	ABC transporter permease	-
E8E00_RS04540 (E8E00_04540)	-	1016019..1017707 (-)	1689	WP_077765735.1	ABC transporter substrate-binding protein	-
E8E00_RS04545 (E8E00_04545)	chiS	1018461..1021862 (-)	3402	WP_096629132.1	response regulator	Regulator
E8E00_RS04550 (E8E00_04550)	rne	1022101..1025007 (-)	2907	WP_096631448.1	ribonuclease E	-
E8E00_RS04555 (E8E00_04555)	rluC	1025583..1026536 (+)	954	WP_096631446.1	23S rRNA pseudouridine(955/2504/2580) synthase RluC	-

Sequence

Protein

• Length: 1133 a.a.
• Molecular weight: 126686.83 Da
• Isoelectric Point: 6.4505

>NTDB_id=359435 E8E00_RS04545 WP_096629132.1 1018461..1021862(-) (chiS) [Salinivibrio sp. YCSC6]
MRKLFIAPPFKRLHHTLMLAFLLLSLLPLILVALFFLNAHSKDLQEQSTAHLLSVRDSKQQQVRDYFDAKESEVLGFVAS
ELAYASGGHFYGLVNAFRSLGPDIDSARQYAQTRYHPGSGHAIKTPVSKGSPNYPGVERYRLLHKRYHRAYLALLARADF
DDLLLVDKQGNVTYSVKKHSNYGTNLLTGPYQDSELGHTFAALKRQDRQVKGKRDPHPNVVMSDFAQDPDGNAYAWLGAP
IIQQGYLHSYALFRLPNHALTALMTPSSSSDIQTLLVGDDLQVRGHSSTPETIANSLAVIEKALDNHTGVERYDNASGDT
MLAAFAPISTHGLHWALVAEVPIDIAFARVRQLEQLFIVAMLLAGFAVVAASNSMSNFITRPLLQLTWAAEKVSAGDLDT
KIHHTRRHDEIGRLAVSFSRMRRAIREKLQLIHQQNQTLEQSLATIQEQNQELQLANKLKDEFLATTSHELRTPLHGMIG
IADALIAGANGPISRDHQYQLSIIVNSGQRLAKLVDDLLDYHKMRYGQLSLENEAVDITSLARLVLSLAEHLKKDKPIRI
INQLPSSSLWVCADTQRLEQVMYNLIGNAVKFTDAGKIVLSAEKIDDRVRIQLVDTGQGIPPEQLNVIFEPLTQAVSDHY
HYQHGAGLGLSITRQLIELMGGQLYVSSQPQIGTTFSFTLPAIEAPDEPVVHLPNDEQPSPLWQPFTPQDVENKTNATTA
TCDDGLLILVVDDEPTNQQVLTSFLQMEGYQVITASDGETALQQVEKERPALVLLDILMPGISGFEVCERLRQQYHHGAL
PIIMLTALNQPDDRIHGFNVGANDYLSKPFNKQELAARIATHLAACDAERRQQENQRLEAALAQSAERQASLLETQSWLI
SQLSLAPEAIIGAGSDGQIRFANASAAALFQQQDANLKRMHSHALIHEPDESQQLERYQGKLTVYIGDQHRDLEGMILRF
PAASEITTLYVMNTDTPVSLARIQSLESAIEALSGYAFRGDARQLDKLKAMGGEFEALVSQAQSQQEDKAQARRQLIVDA
MVAGLEYWEKTTGKSKFDFAEQSGLWRVYLDRSSLQTRTLDKYLLLETLPKTPRWRTVLSSIRYILDHCDKHNTDRTQLE
TYYRQLRQLLLED

Nucleotide

• Length: 3402 bp

>NTDB_id=359435 E8E00_RS04545 WP_096629132.1 1018461..1021862(-) (chiS) [Salinivibrio sp. YCSC6]
ATGAGAAAGCTGTTTATCGCTCCCCCGTTTAAGCGTCTTCATCACACCTTGATGTTGGCTTTTCTCCTGCTGAGCTTATT
GCCTCTGATTCTCGTGGCACTTTTTTTCCTTAATGCTCACAGCAAGGATTTGCAAGAGCAAAGCACCGCACACTTACTTT
CTGTACGCGATAGCAAACAACAACAAGTGCGTGATTACTTTGATGCTAAAGAGTCTGAAGTGTTAGGGTTCGTCGCATCA
GAGCTCGCCTATGCCAGTGGCGGTCACTTTTATGGCTTAGTGAATGCCTTCCGCAGCCTAGGCCCTGATATTGATTCCGC
CCGGCAGTATGCACAAACTCGCTACCATCCCGGTTCAGGTCACGCGATAAAAACGCCCGTCAGCAAAGGCTCGCCGAATT
ATCCCGGTGTAGAACGCTACCGCTTACTGCACAAACGTTATCATCGCGCCTATTTAGCACTATTGGCACGCGCAGACTTT
GACGATCTTCTACTCGTCGATAAACAAGGTAATGTCACCTATTCAGTCAAAAAGCATTCGAACTATGGGACCAATTTATT
GACGGGCCCTTACCAAGATAGCGAGCTGGGTCACACCTTTGCCGCGCTAAAGCGCCAAGATAGGCAGGTGAAAGGTAAAC
GCGATCCTCACCCTAATGTCGTCATGTCAGACTTTGCCCAAGATCCGGATGGCAACGCCTATGCATGGCTCGGCGCTCCC
ATTATTCAGCAAGGCTACCTGCACAGTTATGCCTTGTTTCGGCTTCCCAATCACGCGCTGACCGCGTTAATGACCCCTTC
CTCTTCATCCGACATTCAAACCTTGTTAGTCGGAGACGATCTGCAAGTGCGCGGCCATTCATCGACCCCAGAGACGATTG
CCAACAGTCTGGCAGTGATTGAAAAGGCACTGGATAATCACACAGGGGTTGAACGCTATGACAATGCGTCCGGCGACACC
ATGCTGGCGGCCTTTGCGCCTATCTCAACCCATGGCTTGCATTGGGCGCTTGTCGCTGAAGTGCCAATCGACATTGCGTT
TGCGAGAGTTCGCCAACTCGAACAGCTGTTTATTGTTGCGATGCTGTTGGCCGGCTTTGCCGTGGTGGCTGCATCGAACA
GTATGTCGAACTTTATTACTCGCCCTTTGTTGCAGCTGACATGGGCCGCAGAGAAAGTGAGTGCGGGCGATCTAGATACT
AAAATTCATCACACGCGTCGGCATGATGAAATCGGGCGTTTGGCGGTCAGCTTTTCTCGTATGCGGCGCGCTATCCGTGA
GAAGCTTCAGCTTATCCACCAGCAAAATCAAACACTTGAGCAAAGCTTGGCGACGATTCAAGAGCAAAACCAAGAGTTGC
AGTTGGCTAACAAGCTCAAAGACGAGTTTCTAGCTACCACTTCGCATGAGTTGCGCACGCCTTTGCATGGCATGATTGGG
ATTGCCGACGCCTTGATCGCTGGTGCGAATGGTCCAATTAGTCGTGATCATCAGTATCAACTTTCGATCATTGTTAACAG
CGGCCAACGGTTGGCGAAATTAGTCGATGATCTGCTCGATTATCATAAAATGCGTTATGGTCAGCTCTCGCTCGAAAACG
AAGCGGTCGATATCACCAGCCTAGCGCGTCTTGTCCTTTCTTTGGCTGAACATCTCAAAAAAGATAAGCCAATCCGTATC
ATCAATCAGCTCCCCTCGTCCTCTTTGTGGGTCTGTGCCGATACCCAGCGCCTTGAGCAAGTGATGTATAACCTGATTGG
TAATGCAGTGAAGTTTACTGATGCCGGTAAGATAGTGTTGAGTGCGGAAAAAATTGATGACAGGGTTCGTATTCAGTTAG
TCGATACCGGGCAAGGGATCCCGCCCGAGCAACTGAACGTGATCTTTGAGCCACTCACTCAAGCGGTCAGCGATCACTAC
CACTATCAGCATGGTGCCGGGCTGGGCTTGTCGATCACACGTCAGCTGATTGAGCTTATGGGCGGTCAGCTTTATGTAAG
CAGTCAGCCACAAATCGGTACCACATTTAGTTTTACCCTACCCGCGATCGAAGCGCCTGACGAACCGGTTGTTCATTTAC
CCAATGACGAACAGCCTTCTCCCCTCTGGCAACCCTTTACCCCACAGGACGTCGAAAATAAGACGAACGCAACCACCGCC
ACTTGCGATGATGGCTTACTGATCTTGGTGGTTGATGACGAACCCACCAATCAACAAGTATTAACCAGCTTTTTGCAAAT
GGAGGGTTATCAGGTTATTACCGCTAGCGATGGCGAAACGGCGCTACAACAGGTCGAAAAAGAACGTCCTGCGCTGGTAT
TGCTCGATATACTCATGCCCGGGATAAGTGGCTTTGAAGTCTGTGAGCGATTACGCCAGCAGTATCATCATGGGGCGCTT
CCCATCATCATGCTCACTGCCCTTAATCAACCTGATGATCGCATTCATGGTTTTAACGTGGGTGCTAATGACTATTTGAG
TAAACCGTTCAATAAGCAAGAACTTGCCGCTCGTATTGCCACGCATCTTGCCGCCTGTGATGCCGAGCGACGTCAGCAAG
AAAATCAGCGATTGGAAGCCGCATTAGCGCAAAGTGCAGAGCGACAGGCGAGTCTGCTCGAAACCCAGTCATGGCTGATT
TCACAATTATCCCTCGCCCCTGAAGCGATCATCGGGGCAGGCAGCGATGGTCAAATCCGGTTTGCCAATGCATCTGCCGC
TGCGTTATTTCAACAGCAAGATGCCAATCTCAAGCGTATGCATAGTCATGCCCTGATCCATGAGCCGGATGAGAGCCAAC
AGCTCGAGCGCTATCAAGGTAAGTTGACTGTTTATATCGGCGACCAGCATCGTGATCTAGAAGGCATGATTTTGCGTTTC
CCGGCGGCTTCTGAGATAACCACCTTATATGTGATGAACACTGATACGCCCGTCTCGCTAGCGCGGATCCAAAGTTTAGA
AAGTGCGATTGAGGCTTTGTCTGGCTATGCATTCCGCGGTGATGCGCGCCAACTGGATAAATTAAAAGCCATGGGCGGTG
AGTTTGAAGCCTTAGTGAGCCAAGCCCAGAGCCAGCAAGAGGATAAAGCGCAAGCGCGCCGACAACTCATTGTCGATGCG
ATGGTGGCTGGACTCGAATACTGGGAAAAAACGACGGGCAAAAGTAAGTTCGATTTTGCCGAACAAAGCGGGCTGTGGCG
GGTCTACCTCGACCGCAGTAGCCTACAAACCCGCACATTGGATAAGTACTTACTGCTGGAAACCTTACCCAAAACACCAA
GGTGGCGCACAGTACTCAGCTCTATTCGCTATATTCTTGACCACTGTGACAAACACAATACCGATCGTACTCAGTTAGAA
ACCTACTACCGACAGCTGCGTCAGCTGCTGCTAGAAGACTAA

Domains

Predicted by InterproScan.

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

• Response regulator receiver domain (Response_reg) (728-839)

• HAMP domain (HAMP) (376-427)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-681)

3D structure

• AlphaFold DB: A0A2A4GIE4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	58.502	100	0.586