Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   GSY53_RS21215 Genome accession   NZ_CP047325
Coordinates   4113652..4114779 (+) Length   375 a.a.
NCBI ID   WP_004398842.1    Uniprot ID   P45943
Organism   Bacillus subtilis strain GOT9     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 4108652..4119779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSY53_RS21490 - 4109228..4109406 (-) 179 Protein_4135 hypothetical protein -
  GSY53_RS21190 (GSY53_21190) - 4109761..4110180 (-) 420 WP_004398596.1 thioredoxin-dependent arsenate reductase -
  GSY53_RS21195 (GSY53_21195) acr3 4110192..4111232 (-) 1041 WP_004398718.1 arsenite efflux transporter Acr3 -
  GSY53_RS21200 (GSY53_21200) - 4111255..4111695 (-) 441 WP_003229954.1 ArsI/CadI family heavy metal resistance metalloenzyme -
  GSY53_RS21205 (GSY53_21205) arsR 4111756..4112073 (-) 318 WP_004399122.1 arsenical resistance operon transcriptional regulator ArsR -
  GSY53_RS21210 (GSY53_21210) - 4112445..4113209 (-) 765 WP_004398670.1 YqcI/YcgG family protein -
  GSY53_RS21215 (GSY53_21215) rapC 4113652..4114779 (+) 1128 WP_004398842.1 response regulator aspartate phosphatase RapE Regulator
  GSY53_RS21220 (GSY53_21220) phrE 4114769..4114903 (+) 135 WP_004398770.1 phosphatase RapE inhibitor PhrE -
  GSY53_RS21225 (GSY53_21225) - 4115012..4115170 (+) 159 WP_159357156.1 hypothetical protein -
  GSY53_RS21495 (GSY53_21230) yqcG 4115539..4117133 (+) 1595 Protein_4144 LXG family T7SS effector endonuclease toxin YqcG -
  GSY53_RS21240 (GSY53_21240) - 4117148..4117720 (+) 573 Protein_4145 suppressor of fused domain protein -
  GSY53_RS21245 (GSY53_21245) - 4117836..4117980 (+) 145 Protein_4146 hypothetical protein -
  GSY53_RS21250 (GSY53_21250) - 4117977..4118336 (-) 360 Protein_4147 hypothetical protein -
  GSY53_RS21255 (GSY53_21255) - 4118352..4118831 (-) 480 WP_004399085.1 hypothetical protein -
  GSY53_RS21260 (GSY53_21260) - 4118988..4119194 (-) 207 Protein_4149 peptidoglycan-binding domain-containing protein -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 44636.38 Da        Isoelectric Point: 7.3392

>NTDB_id=359407 GSY53_RS21215 WP_004398842.1 4113652..4114779(+) (rapC) [Bacillus subtilis strain GOT9]
MISITSAEVGMKINEWHRHIQKFNVTDAEMLKAEIERDIEVMEEDQDLLIYYQLMAFRHKIMLEYTLPSDENRMELSEYL
NKIEGHKKKLDNMRAYYYNFFRGMYEFRNGEYTRAITYYKKAERKIPTISDKIEKAEFYFKLSEVYYHMKMTHISMHYAE
LSYNIYKKHELYSVRRIQCHFVIAGNYDDLENHEKALPHLQEALKGAELLKSKNTHIYATAFFNLGNCYHKMDNLNKAAR
YIEQALVQYRKINSDVLPQAYHDLALIYFKQGKKEQAMDCFRKGIRSAVDFKDELFMNLFEALDVLYIRNGDTPKLLNIF
SRLENGKGYPYLEELALLGGNLFDYNGKIEDSIICFKKMVYAQKQISKGECMYEI

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=359407 GSY53_RS21215 WP_004398842.1 4113652..4114779(+) (rapC) [Bacillus subtilis strain GOT9]
TTGATATCAATCACATCAGCTGAAGTGGGAATGAAGATTAATGAATGGCATAGGCATATTCAAAAATTCAACGTAACTGA
TGCTGAAATGTTAAAAGCTGAAATAGAACGTGATATAGAGGTTATGGAAGAAGATCAAGACTTGCTTATTTATTATCAAC
TAATGGCCTTTCGCCATAAAATTATGTTGGAATACACGCTGCCATCTGATGAAAACCGAATGGAACTTTCAGAATATTTA
AATAAAATTGAGGGCCATAAGAAAAAATTAGACAATATGCGGGCATATTATTATAACTTCTTCCGCGGGATGTATGAGTT
TAGAAACGGTGAATACACAAGAGCCATTACATATTACAAAAAAGCTGAACGCAAAATTCCTACAATCTCCGACAAGATTG
AAAAAGCTGAGTTTTATTTTAAACTGTCTGAAGTCTATTATCATATGAAAATGACACACATTTCGATGCATTACGCTGAG
CTTTCATACAACATTTATAAGAAACACGAGCTTTACTCTGTTCGTCGTATTCAGTGCCATTTTGTCATTGCCGGTAACTA
CGATGACCTTGAAAATCATGAAAAAGCTCTCCCCCACCTTCAAGAAGCTTTAAAAGGTGCCGAGCTGCTTAAAAGTAAAA
ATACTCATATCTATGCCACTGCGTTTTTCAATCTCGGCAATTGCTATCACAAAATGGACAACTTAAATAAGGCTGCTCGT
TACATCGAACAAGCCTTGGTTCAATACAGAAAAATTAACTCTGACGTACTTCCGCAAGCTTATCATGACCTAGCGTTGAT
TTATTTTAAACAAGGCAAAAAAGAACAAGCAATGGATTGCTTCCGCAAAGGAATCAGAAGTGCTGTAGATTTTAAAGACG
AACTATTTATGAACTTATTTGAAGCATTAGACGTTCTTTATATAAGAAATGGCGATACACCTAAACTTCTCAACATTTTT
TCTCGTTTAGAGAACGGCAAAGGATACCCTTATCTGGAAGAGCTGGCATTGTTAGGAGGCAACCTTTTCGATTATAATGG
AAAAATAGAGGATAGTATCATCTGTTTCAAGAAGATGGTATATGCTCAAAAGCAAATATCGAAAGGGGAATGCATGTATG
AAATCTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(184-246)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-64)

Tetratricopeptide repeat (TPR_8)

(259-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P45943

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.897

100

0.413
  rapF Bacillus subtilis subsp. subtilis str. 168

38.196

100

0.384