Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   I33_RS04105 Genome accession   NC_017195
Coordinates   832298..833014 (+) Length   238 a.a.
NCBI ID   WP_014476143.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis str. RO-NN-1     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 827298..838014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I33_RS04090 (I33_0875) yfkQ 827372..828913 (-) 1542 WP_014476140.1 spore germination protein -
  I33_RS04095 (I33_0876) treP 829106..830518 (+) 1413 WP_014476141.1 PTS system trehalose-specific EIIBC component -
  I33_RS04100 (I33_0877) treC 830589..832277 (+) 1689 WP_014476142.1 alpha,alpha-phosphotrehalase -
  I33_RS04105 (I33_0878) treR 832298..833014 (+) 717 WP_014476143.1 trehalose operon repressor Regulator
  I33_RS04110 (I33_0879) hypO 833154..833819 (+) 666 WP_014476144.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27869.87 Da        Isoelectric Point: 7.5090

>NTDB_id=35936 I33_RS04105 WP_014476143.1 832298..833014(+) (treR) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
MKVNKFITIYKDIAQRIEGGRWKAEEILPSEHELTAQYGTSRETVRKALHMLAQNGYIQKIRGKGSVVLNREKMQFPVSG
LVSFKELAQTLGKETKTTVHKFGLEPPSELIQKQLRANLDDDIWEVIRSRKIDGEHVILDKDYFFRKHVPHLTKEICENS
IYEYIEGELGLSISYAQKEIVAEPCTDEDRELLDLRGYDHMVVVRNYVFLEDTSLFQYTESRHRLDKFRFVDFARRGK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=35936 I33_RS04105 WP_014476143.1 832298..833014(+) (treR) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
ATGAAGGTGAATAAATTCATCACAATTTATAAAGACATCGCACAGCGAATTGAAGGCGGCCGATGGAAAGCGGAGGAGAT
TCTTCCGTCTGAACATGAGTTGACCGCACAGTACGGTACATCAAGAGAAACGGTCCGAAAGGCGCTTCATATGCTCGCGC
AAAACGGTTATATCCAGAAAATCAGGGGAAAAGGCTCCGTCGTGCTCAATCGTGAAAAAATGCAGTTTCCCGTTTCGGGC
CTTGTCAGCTTCAAGGAACTCGCGCAAACGCTTGGCAAAGAAACGAAAACAACTGTACACAAATTCGGGCTGGAGCCTCC
GTCAGAGCTGATCCAAAAACAGCTCCGGGCCAATCTAGATGACGACATCTGGGAAGTCATCAGGTCTAGAAAGATTGACG
GGGAGCATGTGATTTTGGACAAGGATTACTTTTTCAGAAAGCATGTCCCTCACTTGACGAAAGAAATTTGTGAAAACTCC
ATATATGAATATATAGAAGGAGAGCTCGGTCTTTCGATCAGTTACGCCCAAAAAGAAATTGTCGCCGAGCCGTGTACGGA
CGAGGACAGAGAGCTGCTCGATTTACGCGGCTATGACCATATGGTCGTGGTGAGAAATTACGTCTTTTTGGAGGATACCA
GTTTGTTTCAATATACGGAAAGCAGACACCGTCTCGACAAATTCCGATTTGTTGATTTTGCGCGGCGGGGGAAATGA

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(91-229)

Bacterial regulatory proteins, gntR family (GntR)

(8-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.308

98.319

0.416

Multiple sequence alignment