Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AV979_RS13880 Genome accession   NZ_CP039500
Coordinates   2821547..2822152 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000211     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2816547..2827152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AV979_RS13865 (AV979_013880) helD 2816764..2818818 (-) 2055 WP_023193194.1 DNA helicase IV -
  AV979_RS13870 (AV979_013885) - 2818942..2819388 (+) 447 WP_001261222.1 YccF domain-containing protein -
  AV979_RS13875 (AV979_013890) yccS 2819407..2821560 (+) 2154 WP_000950869.1 YccS family putative transporter -
  AV979_RS13880 (AV979_013895) sxy/tfoX 2821547..2822152 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  AV979_RS13885 (AV979_013900) sulA 2822369..2822878 (+) 510 WP_031609721.1 SOS-induced cell division inhibitor SulA -
  AV979_RS13890 (AV979_013905) ompA 2823235..2824287 (+) 1053 WP_023193195.1 porin OmpA -
  AV979_RS13895 (AV979_013910) matP 2824359..2824811 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  AV979_RS13900 (AV979_013915) - 2824997..2826757 (+) 1761 WP_000156448.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=359346 AV979_RS13880 WP_001202375.1 2821547..2822152(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000211]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=359346 AV979_RS13880 WP_001202375.1 2821547..2822152(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000211]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTCTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTCATGAAATGCGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTCGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment