Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   GSY53_RS11560 Genome accession   NZ_CP047325
Coordinates   2246595..2247725 (+) Length   376 a.a.
NCBI ID   WP_032677448.1    Uniprot ID   -
Organism   Bacillus subtilis strain GOT9     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2241595..2252725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSY53_RS11545 (GSY53_11545) - 2243428..2244434 (+) 1007 Protein_2220 hypothetical protein -
  GSY53_RS11550 (GSY53_11550) - 2244649..2245086 (+) 438 WP_015252628.1 hypothetical protein -
  GSY53_RS11555 (GSY53_11555) - 2245289..2246449 (+) 1161 WP_003233867.1 lysozyme inhibitor LprI family protein -
  GSY53_RS11560 (GSY53_11560) rapC 2246595..2247725 (+) 1131 WP_032677448.1 response regulator aspartate phosphatase RapH Regulator
  GSY53_RS11565 (GSY53_11565) phrH 2247715..2247888 (+) 174 WP_029317430.1 phosphatase RapH inhibitor PhrH -
  GSY53_RS11570 (GSY53_11570) yeeI 2248048..2248767 (+) 720 WP_003233863.1 YebC/PmpR family DNA-binding transcriptional regulator -
  GSY53_RS11575 (GSY53_11575) yeeK 2248901..2249338 (+) 438 WP_019712803.1 spore coat protein YeeK -
  GSY53_RS11580 (GSY53_11580) yezE 2249453..2250037 (+) 585 WP_003243181.1 TetR/AcrR family transcriptional regulator -
  GSY53_RS11585 (GSY53_11585) yesE 2250116..2250559 (+) 444 WP_019712804.1 nuclear transport factor 2 family protein -
  GSY53_RS11590 (GSY53_11590) yesF 2250556..2251421 (+) 866 Protein_2229 NAD-dependent epimerase/dehydratase family protein -
  GSY53_RS11595 (GSY53_11595) cotJA 2251551..2251799 (+) 249 WP_003219489.1 spore coat-associated protein CotJA -
  GSY53_RS11600 (GSY53_11600) cotJB 2251783..2252046 (+) 264 WP_003219491.1 spore coat protein CotJB -
  GSY53_RS11605 (GSY53_11605) cotJC 2252061..2252630 (+) 570 WP_003233850.1 spore coat protein CotJC -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 43990.33 Da        Isoelectric Point: 5.9921

>NTDB_id=359330 GSY53_RS11560 WP_032677448.1 2246595..2247725(+) (rapC) [Bacillus subtilis strain GOT9]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVKQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGQTYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDEIEKAEFHFKVAEAYYHMKQTHVSMH
HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=359330 GSY53_RS11560 WP_032677448.1 2246595..2247725(+) (rapC) [Bacillus subtilis strain GOT9]
TTGAGTCAAGCCATACCGTCTTCGCGTGTAGGTGTTAAGATTAATGAATGGTATAAAATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGATTCTGAAAGCGGAGGTGAAGCAGGACATTCAGCAAATGGAAGAAGATCAGGATTTGCTGATCTATTATT
CTCTGATGTGTTTTCGTCACCAGCTGATGCTTGATTATTTGGAGCCGGGACAAACATACGGGAATCGCCCTACAGTGACA
GAGCTTCTTGAAACGATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGATCAAAAAGAATATGTGGAAGCGATCGGGTATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTGTCAG
ATGAAATTGAGAAAGCGGAATTCCATTTTAAAGTGGCCGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATATTCTTCAAGCCTTGGACATTTATCAAAACCATCCTCTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAGGCGGCGCTGGAATTGGCAATGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATTGCAAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGACGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCGTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCCGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.691

100

0.407
  rapF Bacillus subtilis subsp. subtilis str. 168

40.318

100

0.404