Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   I33_RS02350 Genome accession   NC_017195
Coordinates   469894..470328 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis subsp. subtilis str. RO-NN-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 464894..475328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I33_RS02320 (I33_0482) ydaD 465555..466415 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  I33_RS02325 (I33_0483) lyxE 466431..466934 (+) 504 WP_014475842.1 D-lyxose ketol-isomerase -
  I33_RS02330 (I33_0484) ydaF 467021..467572 (+) 552 WP_014475843.1 GNAT family protein -
  I33_RS02335 (I33_0485) ydaG 467650..468072 (+) 423 WP_014475844.1 pyridoxamine 5'-phosphate oxidase family protein -
  I33_RS02340 (I33_0486) amj 468581..469390 (+) 810 WP_014475845.1 lipid II flippase Amj -
  I33_RS02345 (I33_0487) ydzA 469435..469725 (-) 291 WP_014475846.1 DUF3817 domain-containing protein -
  I33_RS02350 (I33_0488) lrpC 469894..470328 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  I33_RS02355 (I33_0489) topB 470393..472576 (+) 2184 WP_014475847.1 DNA topoisomerase III -
  I33_RS02360 (I33_0490) ephJ 472779..473867 (+) 1089 WP_014475848.1 hypothetical protein -
  I33_RS02365 (I33_0491) epsK 473848..474699 (+) 852 WP_014475849.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=35931 I33_RS02350 WP_003246585.1 469894..470328(+) (lrpC) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=35931 I33_RS02350 WP_003246585.1 469894..470328(+) (lrpC) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTTGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTATGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment