Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   GSY53_RS08130 Genome accession   NZ_CP047325
Coordinates   1573534..1573764 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain GOT9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1568534..1578764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSY53_RS08100 (GSY53_08100) ridA 1568699..1569076 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  GSY53_RS08105 (GSY53_08105) spoVG 1569270..1569563 (+) 294 WP_003218346.1 septation regulator SpoVG -
  GSY53_RS08110 (GSY53_08110) glmU 1569756..1571126 (+) 1371 WP_003226732.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  GSY53_RS08115 (GSY53_08115) prsS 1571149..1572102 (+) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  GSY53_RS08120 (GSY53_08120) rplYB 1572187..1572801 (+) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  GSY53_RS08125 (GSY53_08125) pth 1572908..1573474 (+) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  GSY53_RS08130 (GSY53_08130) subA/fin 1573534..1573764 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  GSY53_RS08135 (GSY53_08135) mfd 1573834..1577367 (+) 3534 WP_003226723.1 transcription-repair coupling factor -
  GSY53_RS08140 (GSY53_08140) spoVT 1577503..1578039 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=359305 GSY53_RS08130 WP_003243417.1 1573534..1573764(+) (subA/fin) [Bacillus subtilis strain GOT9]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=359305 GSY53_RS08130 WP_003243417.1 1573534..1573764(+) (subA/fin) [Bacillus subtilis strain GOT9]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGATTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1