Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   I33_RS00325 Genome accession   NC_017195
Coordinates   59989..60219 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis subsp. subtilis str. RO-NN-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 54989..65219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I33_RS00295 (I33_0059) ridA 55153..55530 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  I33_RS00300 (I33_0060) spoVG 55725..56018 (+) 294 WP_003218346.1 septation regulator SpoVG -
  I33_RS00305 (I33_0062) glmU 56211..57581 (+) 1371 WP_014475576.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  I33_RS00310 (I33_0063) prsS 57604..58557 (+) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  I33_RS00315 (I33_0064) rplYB 58642..59256 (+) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  I33_RS00320 (I33_0065) pth 59363..59929 (+) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  I33_RS00325 (I33_0066) subA/fin 59989..60219 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  I33_RS00330 mfd 60289..63822 (+) 3534 WP_041519048.1 transcription-repair coupling factor -
  I33_RS00335 (I33_0068) spoVT 63958..64494 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=35915 I33_RS00325 WP_003243417.1 59989..60219(+) (subA/fin) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=35915 I33_RS00325 WP_003243417.1 59989..60219(+) (subA/fin) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment