Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   GSY65_RS11675 Genome accession   NZ_CP047318
Coordinates   2799299..2801236 (+) Length   645 a.a.
NCBI ID   WP_159767270.1    Uniprot ID   -
Organism   Streptomyces sp. HM190     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2794299..2806236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSY65_RS11655 - 2794349..2794654 (+) 306 WP_159767267.1 YtxH domain-containing protein -
  GSY65_RS11660 - 2794676..2795550 (-) 875 Protein_2319 IS5 family transposase -
  GSY65_RS11665 - 2795956..2797410 (+) 1455 WP_159767268.1 FGGY family carbohydrate kinase -
  GSY65_RS11670 rcrP 2797566..2799299 (+) 1734 WP_159767269.1 ABC transporter ATP-binding protein Regulator
  GSY65_RS11675 rcrQ 2799299..2801236 (+) 1938 WP_159767270.1 ABC transporter ATP-binding protein Regulator
  GSY65_RS11680 - 2801358..2802671 (-) 1314 WP_159767271.1 RNA polymerase sigma factor -
  GSY65_RS11685 dnaG 2802884..2804785 (-) 1902 WP_159767272.1 DNA primase -
  GSY65_RS11690 - 2804815..2806086 (-) 1272 WP_159767273.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 645 a.a.        Molecular weight: 69622.01 Da        Isoelectric Point: 5.5572

>NTDB_id=359118 GSY65_RS11675 WP_159767270.1 2799299..2801236(+) (rcrQ) [Streptomyces sp. HM190]
MAGPLGRMAGARGGPDQQSMDFKGSGKRLLAQFRPERFTMYAMIVCAVLSVGLSVLGPWILGRATDLVFAGVVGREMPAG
QTKAEVLEGLRERGDGGVADMLSGTDFTPGQGIDFDAVGAVLLVALGIFLVAGLLMAGATRLSTRAINRTMFHLRAELQA
KLSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLVNSLLTIVGVLVMMFWVSPLLALVALVTVPLSFVVATRVG
KRSQPHFVAQWRTTGKLNAHIEEMYTGHTLVKVFGRQEESARQFAEENERLYEAGFKAQFNSGIMQPLMFFVSNLNYVLV
AVVGGLRVATGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQAADAVPGVRPEELRGRVAL
EHVSFRYEPDKPLIEDLSLVVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDIASMSRDELRDGIGMVLQD
TWLFGGTIADNIAYGASTARKVTRGEIEEAARAAHADRFIRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILV
LDEATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHEELLASGGAYARLYKAQFAQA
VAEID

Nucleotide


Download         Length: 1938 bp        

>NTDB_id=359118 GSY65_RS11675 WP_159767270.1 2799299..2801236(+) (rcrQ) [Streptomyces sp. HM190]
ATGGCGGGGCCGTTGGGACGCATGGCGGGAGCCAGGGGCGGTCCCGATCAGCAGTCCATGGACTTCAAGGGGTCCGGCAA
ACGCCTGCTCGCGCAGTTCAGGCCCGAGCGGTTCACCATGTACGCGATGATCGTGTGCGCGGTGCTGAGTGTCGGTCTGT
CGGTGCTGGGCCCGTGGATCCTCGGCCGGGCGACCGACCTGGTCTTCGCGGGTGTGGTCGGGCGGGAGATGCCGGCCGGC
CAGACCAAGGCCGAGGTGCTCGAAGGGCTGCGCGAGCGGGGTGACGGCGGTGTCGCCGACATGCTGTCCGGCACGGACTT
CACGCCCGGCCAGGGCATCGACTTCGACGCCGTCGGCGCCGTGCTGCTGGTTGCCCTCGGCATCTTCCTGGTCGCGGGGC
TGCTGATGGCGGGGGCCACCCGGCTGTCCACCCGGGCCATCAACCGGACGATGTTCCACCTGCGGGCGGAGCTCCAGGCG
AAGCTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGGCAGCGCGGTGAGGTGCTCAGCCGGGCCACCAACGACATCGA
CAACATCGGCCAGACGCTGCAGCAGTCGATGGGGCAGCTCGTCAACTCGCTGCTGACGATCGTCGGTGTGCTGGTGATGA
TGTTCTGGGTGTCGCCGCTGCTGGCGCTGGTCGCGCTGGTGACCGTGCCGCTGTCGTTCGTGGTGGCCACGCGGGTCGGC
AAGCGGTCGCAGCCGCACTTCGTGGCGCAGTGGCGGACCACCGGGAAGCTCAACGCGCACATCGAGGAGATGTACACCGG
GCACACCCTCGTGAAGGTGTTCGGGCGGCAGGAGGAGTCGGCGCGGCAGTTCGCCGAGGAGAACGAACGGCTGTACGAGG
CCGGGTTCAAGGCCCAGTTCAACAGCGGGATCATGCAGCCGCTGATGTTCTTCGTGTCGAACCTCAACTATGTGCTGGTC
GCCGTGGTCGGCGGACTGCGGGTGGCCACCGGTGCCCTGTCCATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGGCA
GTTCTCGATGCCGCTGACGCAGGTCGCGTCCATGGCGAACCTGGTGCAGTCGGGCGTCGCGTCCGCCGAGCGGATCTTCG
AGCTGCTGGACGCGGAGGAGCAGGCCGCGGACGCCGTGCCCGGGGTGCGGCCCGAGGAACTGCGCGGGCGGGTGGCGCTG
GAGCACGTCTCCTTCCGCTACGAGCCGGACAAGCCGCTGATCGAGGACCTGTCGCTGGTGGTCGAGCCCGGCCACACGGT
GGCGATCGTGGGGCCCACGGGCGCCGGCAAGACCACCCTGGTGAACCTGCTGATGCGGTTCTACGAGGTCACCGGCGGGC
GGATCACGCTGGACGGCGTGGACATCGCCTCCATGTCCCGTGACGAGCTGCGCGACGGGATAGGGATGGTCCTCCAGGAC
ACCTGGCTGTTCGGCGGAACCATCGCGGACAACATCGCGTACGGGGCGTCCACCGCGCGCAAGGTGACGCGCGGGGAGAT
CGAGGAGGCCGCGCGGGCCGCGCACGCGGACCGGTTCATCCGGACGCTGCCGGACGGCTACGACACCGTGATCGACGACG
AGGGCAGCGGGGTGAGCGCGGGTGAGAAGCAGCTCATCACCATCGCCCGGGCGTTCCTGTCGGACCCGGTGATCCTGGTG
CTGGACGAGGCGACGAGTTCCGTGGACACCCGGACCGAGGTGCTGATCCAGAAGGCGATGGCCAAGCTGGCGCACGGGCG
GACGTCGTTCGTCATCGCGCACCGGCTGTCGACGATCCGGGACGCCGACACGATCCTGGTGATGGAGAACGGGTCGATCG
TCGAACAGGGCGCGCACGAGGAGCTGCTGGCGTCGGGCGGGGCGTACGCGCGGCTGTACAAGGCGCAGTTCGCGCAGGCG
GTGGCCGAGATCGACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(415-566)

ABC transporter transmembrane region (ABC_membrane)

(42-352)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.064

96.744

0.388