Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrP   Type   Regulator
Locus tag   GSY65_RS11670 Genome accession   NZ_CP047318
Coordinates   2797566..2799299 (+) Length   577 a.a.
NCBI ID   WP_159767269.1    Uniprot ID   -
Organism   Streptomyces sp. HM190     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 2792566..2804299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSY65_RS11655 - 2794349..2794654 (+) 306 WP_159767267.1 YtxH domain-containing protein -
  GSY65_RS11660 - 2794676..2795550 (-) 875 Protein_2319 IS5 family transposase -
  GSY65_RS11665 - 2795956..2797410 (+) 1455 WP_159767268.1 FGGY family carbohydrate kinase -
  GSY65_RS11670 rcrP 2797566..2799299 (+) 1734 WP_159767269.1 ABC transporter ATP-binding protein Regulator
  GSY65_RS11675 rcrQ 2799299..2801236 (+) 1938 WP_159767270.1 ABC transporter ATP-binding protein Regulator
  GSY65_RS11680 - 2801358..2802671 (-) 1314 WP_159767271.1 RNA polymerase sigma factor -

Sequence


Protein


Download         Length: 577 a.a.        Molecular weight: 62889.20 Da        Isoelectric Point: 6.2786

>NTDB_id=359117 GSY65_RS11670 WP_159767269.1 2797566..2799299(+) (rcrP) [Streptomyces sp. HM190]
MLIRLLRSHLRPYKKPIALLVLLQFVQTCATLYLPTLNADIIDNGVVQGDTGYILALGGLMIGISLVQVLCNIGAVYYGA
RTAAAVGRDVRAAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLVLMTFTLVVSAPIMCVGGIVLALGLDVPLSGV
LLAVVPVLGVSVSLIVRRLRPLFRTMQERLDIVNRVLREQITGNRVIRAFVRDDYEKDRFRTANTELTEVSLGTGRILAL
MFPIVMTVVNFSSIAVVWFGAHRIDSGGMEIGALTAFLAYLMQIVMAVMMATFMFMMLPRAEVCAERIQEVLDTGTSVVP
PLAPVRELRRRGYLEIRGAGFRYPGAEEPVLRSIEVVARPGETTAVIGSTGSGKSTLLGLVPRLFDVTEGEVLVDGVDVR
TIDPRLLARTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVERLEGGLNAPVAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALSLETAEATVVIVAQRVSTIRDADRIVVLDEGRVVGTGRHHELMAEN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=359117 GSY65_RS11670 WP_159767269.1 2797566..2799299(+) (rcrP) [Streptomyces sp. HM190]
GTGCTCATACGACTGCTCAGAAGTCATCTACGTCCGTACAAGAAACCCATCGCCCTGCTGGTGCTGCTGCAGTTCGTGCA
GACATGCGCCACGCTCTACCTGCCCACACTGAACGCGGACATCATCGACAACGGTGTCGTGCAGGGCGACACGGGCTACA
TCCTGGCCCTCGGCGGTCTGATGATCGGGATCTCACTGGTCCAGGTCCTCTGCAACATCGGGGCCGTGTACTACGGAGCC
CGCACGGCTGCGGCGGTCGGCCGGGACGTCCGGGCGGCCGTGTTCGACCGGGTGCAGTCGTTCTCGGCACGTGAGGTCGG
TCACTTCGGGGCGCCGTCGCTGATCACGCGGACCACGAACGACGTCCAGCAGGTCCAGATGCTGGTGCTGATGACGTTCA
CCCTGGTGGTGTCCGCGCCGATCATGTGCGTGGGCGGCATCGTGCTGGCGCTCGGTCTGGACGTGCCGCTGTCGGGTGTG
CTGCTGGCCGTGGTGCCGGTGCTCGGTGTCTCCGTCAGCCTCATCGTGCGCCGGCTGCGCCCCCTTTTCCGCACCATGCA
GGAGCGGCTCGACATCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGGGCGTTCGTCCGGGACG
ACTACGAGAAGGACCGCTTCCGCACGGCCAACACCGAGCTGACGGAGGTGTCGCTGGGCACCGGCCGGATACTGGCGCTG
ATGTTCCCGATCGTGATGACGGTCGTCAACTTCTCGTCCATCGCCGTCGTGTGGTTCGGCGCCCACCGGATCGACAGCGG
CGGGATGGAGATCGGTGCCCTCACCGCTTTCCTCGCCTATCTGATGCAGATCGTCATGGCGGTGATGATGGCCACCTTCA
TGTTCATGATGTTGCCGCGCGCCGAGGTGTGCGCCGAGCGCATCCAGGAGGTCCTCGACACCGGGACCAGCGTCGTGCCT
CCGCTCGCGCCCGTGCGGGAGCTGCGGCGGCGCGGGTACCTGGAGATCCGGGGCGCCGGCTTCCGCTACCCGGGGGCCGA
GGAACCGGTGCTGCGGTCCATCGAGGTCGTGGCGCGGCCGGGTGAGACGACCGCCGTCATCGGGTCGACCGGCAGCGGGA
AGTCGACCCTGCTGGGGCTGGTGCCCCGGTTGTTCGACGTCACCGAGGGCGAGGTGCTCGTCGACGGAGTCGACGTGCGC
ACGATCGATCCGCGGCTGCTGGCCAGGACCGTGAGCCTGGTGCCGCAGAAGCCGTACCTCTTCTCGGGGACCGTGGCGAC
GAACCTGCGGTACGGCAATCCGGACGCCACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGAGTTCG
TCGAGCGGCTGGAGGGCGGGCTGAACGCCCCCGTCGCGCAGGGCGGCACCAATGTGTCGGGCGGTCAGCGGCAGCGGCTG
GCGATCGCGCGGACGCTGGTGCAGCGCCCGGAGATCTATCTGTTCGACGACTCGTTCTCCGCGCTCGACTACGCGACGGA
CGCGGCGCTGCGGGCGGCCCTGTCGCTGGAGACCGCCGAGGCGACCGTCGTCATCGTGGCGCAGCGGGTGTCGACCATCC
GCGACGCCGACCGGATCGTGGTCCTGGACGAGGGCCGTGTCGTGGGGACGGGACGGCACCACGAGCTGATGGCCGAGAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCAGCCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.243

100

0.395