Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   GSY65_RS04255 Genome accession   NZ_CP047318
Coordinates   1116384..1117025 (+) Length   213 a.a.
NCBI ID   WP_159766024.1    Uniprot ID   -
Organism   Streptomyces sp. HM190     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1111384..1122025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSY65_RS04225 - 1112436..1112747 (-) 312 WP_055523895.1 urease subunit beta -
  GSY65_RS04230 - 1112758..1113060 (-) 303 WP_048819736.1 urease subunit gamma -
  GSY65_RS04235 - 1113273..1113902 (-) 630 WP_159766021.1 TetR/AcrR family transcriptional regulator -
  GSY65_RS04240 - 1114087..1115205 (+) 1119 WP_236579697.1 ABC transporter permease -
  GSY65_RS04245 - 1115465..1115743 (-) 279 WP_159766022.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  GSY65_RS04250 - 1115878..1116213 (+) 336 WP_159766023.1 hypothetical protein -
  GSY65_RS04255 clpP 1116384..1117025 (+) 642 WP_159766024.1 ATP-dependent Clp protease proteolytic subunit Regulator
  GSY65_RS04260 - 1117033..1117350 (+) 318 WP_159766025.1 hypothetical protein -
  GSY65_RS04265 - 1118045..1118518 (+) 474 WP_159766026.1 C40 family peptidase -
  GSY65_RS04270 - 1118658..1119128 (+) 471 Protein_857 DUF6328 family protein -
  GSY65_RS04275 - 1119204..1119662 (-) 459 WP_159766027.1 ATP-binding protein -
  GSY65_RS04280 - 1119909..1120874 (+) 966 WP_159766028.1 helix-turn-helix transcriptional regulator -
  GSY65_RS04285 - 1120790..1121014 (+) 225 WP_055512956.1 DUF397 domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23334.47 Da        Isoelectric Point: 6.7555

>NTDB_id=359104 GSY65_RS04255 WP_159766024.1 1116384..1117025(+) (clpP) [Streptomyces sp. HM190]
MPAHRPSARHVLPEFTEHTSAGHRTMDPYAKLLEERIVFLGTQIDDTSANDVMAQFMQLEYQSPDRDISLYINSPGGSFS
AMTAIYDTIRFVTCDVETVCLGRAQASAAVLLAAGTPGKRSVLPGAQVVIRQPALAEPVTGRASDLAIRAEELTRNRRLL
EEMLVRHTRQSHERISGDIERDTILDAQGAVDYGLVDRVVPGRKGSRALPGAR

Nucleotide


Download         Length: 642 bp        

>NTDB_id=359104 GSY65_RS04255 WP_159766024.1 1116384..1117025(+) (clpP) [Streptomyces sp. HM190]
GTGCCAGCGCACCGGCCGTCCGCCCGCCATGTGCTCCCCGAATTCACCGAGCACACGAGTGCGGGTCACCGAACGATGGA
TCCCTACGCGAAGTTGCTGGAGGAGCGGATCGTGTTCCTCGGGACGCAGATCGACGACACGTCGGCGAACGACGTGATGG
CGCAGTTCATGCAACTGGAGTACCAGTCCCCGGACCGGGACATCTCCCTCTACATCAACTCCCCCGGCGGCTCGTTCAGC
GCGATGACGGCGATCTACGACACGATCCGCTTCGTCACCTGCGACGTGGAGACCGTCTGCCTCGGCCGGGCCCAGGCATC
CGCCGCGGTACTCCTGGCGGCGGGCACACCGGGCAAGCGATCCGTGCTGCCGGGCGCGCAGGTGGTGATCCGTCAGCCGG
CTCTGGCCGAGCCGGTCACCGGACGGGCGAGCGATCTGGCGATCCGGGCCGAGGAACTGACGCGCAACCGCCGGCTGCTG
GAGGAGATGCTCGTACGGCACACCAGGCAGAGCCACGAACGGATCAGCGGCGACATCGAGCGGGACACGATCCTCGACGC
CCAGGGCGCCGTGGACTACGGCCTGGTCGACCGGGTGGTGCCGGGCCGCAAGGGCTCACGGGCGCTCCCCGGCGCGAGGT
GA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(22-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

41.361

89.671

0.371

Multiple sequence alignment