Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GTH07_RS08880 Genome accession   NZ_CP047305
Coordinates   1966418..1967020 (-) Length   200 a.a.
NCBI ID   WP_001260579.1    Uniprot ID   Q9KT49
Organism   Vibrio cholerae O37 strain ATCC 25872     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1961418..1972020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTH07_RS08850 (GTH07_08850) - 1961657..1962112 (-) 456 WP_001918409.1 Lrp/AsnC family transcriptional regulator -
  GTH07_RS08855 (GTH07_08855) - 1962237..1963304 (+) 1068 WP_000337335.1 PLP-dependent cysteine synthase family protein -
  GTH07_RS08860 (GTH07_08860) sohB 1963429..1964490 (-) 1062 WP_000394900.1 protease SohB -
  GTH07_RS08865 (GTH07_08865) - 1964649..1965392 (+) 744 WP_001109956.1 YciK family oxidoreductase -
  GTH07_RS08870 (GTH07_08870) - 1965486..1965923 (-) 438 WP_001880862.1 YcgN family cysteine cluster protein -
  GTH07_RS08875 (GTH07_08875) - 1966061..1966309 (+) 249 WP_000340595.1 YkgJ family cysteine cluster protein -
  GTH07_RS08880 (GTH07_08880) recR 1966418..1967020 (-) 603 WP_001260579.1 recombination mediator RecR Machinery gene
  GTH07_RS08885 (GTH07_08885) - 1967035..1967364 (-) 330 WP_000467102.1 YbaB/EbfC family nucleoid-associated protein -
  GTH07_RS08890 (GTH07_08890) dnaX 1967435..1969528 (-) 2094 WP_053048906.1 DNA polymerase III subunit gamma/tau -
  GTH07_RS08895 (GTH07_08895) apt 1969547..1970092 (-) 546 WP_000206220.1 adenine phosphoribosyltransferase -
  GTH07_RS08900 (GTH07_08900) - 1970224..1970622 (-) 399 WP_001889904.1 YbaN family protein -
  GTH07_RS18790 - 1970622..1970753 (-) 132 WP_000013199.1 hypothetical protein -
  GTH07_RS08905 (GTH07_08905) - 1970923..1972014 (-) 1092 WP_032469072.1 response regulator -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21840.95 Da        Isoelectric Point: 6.1558

>NTDB_id=359066 GTH07_RS08880 WP_001260579.1 1966418..1967020(-) (recR) [Vibrio cholerae O37 strain ATCC 25872]
MRTSHMLEHLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLAEALSQAMVEIGHCQECRTFTEQDVCHICSNPKRKEN
GQLCVVESPADIAALEATGQFSGRYFVLMGHLSPLDGIGPSDIGLDTLDYRLQRGDISEVILATNPTVEGEATAQYIAEL
CREHQVTASRIAHGVPVGGELELVDGTTLSHSLLGRHKLF

Nucleotide


Download         Length: 603 bp        

>NTDB_id=359066 GTH07_RS08880 WP_001260579.1 1966418..1967020(-) (recR) [Vibrio cholerae O37 strain ATCC 25872]
ATGCGTACCAGTCACATGCTGGAACATTTGATGGAAGCGTTACGCTGCCTGCCGGGCGTTGGCCCAAAATCAGCGCAGCG
TATGGCATTCCATCTGTTACAGCGCGATCGTAAAGGTGGTTTACAACTGGCTGAGGCACTGAGTCAGGCGATGGTCGAAA
TCGGCCATTGTCAGGAGTGCCGAACTTTTACTGAGCAGGATGTTTGCCACATCTGTAGCAACCCAAAACGTAAAGAAAAT
GGTCAGTTGTGTGTGGTTGAAAGCCCAGCAGATATTGCGGCGCTAGAAGCTACCGGTCAATTTTCTGGTCGCTATTTTGT
GTTGATGGGGCACTTATCACCGCTGGATGGTATTGGTCCGAGCGATATTGGCCTCGATACGCTGGATTATCGCTTGCAAC
GCGGTGATATCAGTGAGGTGATCCTCGCCACTAACCCGACGGTGGAAGGTGAGGCGACCGCGCAATACATTGCCGAGTTG
TGTCGTGAGCATCAAGTCACCGCAAGTCGCATTGCACATGGTGTTCCTGTGGGCGGCGAACTTGAGTTGGTGGATGGCAC
GACCTTATCCCATTCGCTGTTGGGCCGTCACAAACTGTTTTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(82-172)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KT49

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.5

0.445
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.221

99.5

0.44